quinlan-lab / applied-computational-genomics
Applied Computational Genomics Course at UU: Spring 2020
☆969Updated last year
Alternatives and similar repositories for applied-computational-genomics
Users that are interested in applied-computational-genomics are comparing it to the libraries listed below
Sorting:
- A list of useful bioinformatics resources☆604Updated 2 weeks ago
- Unix, R and python tools for genomics and data science☆1,273Updated 2 months ago
- RNAseq analysis notes from Ming Tang☆1,009Updated 3 years ago
- bedtools - the swiss army knife for genome arithmetic☆978Updated 2 months ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,297Updated last week
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆1,027Updated this week
- Toolkit for processing sequences in FASTA/Q formats☆1,457Updated 9 months ago
- python module to plot beautiful and highly customizable genome browser tracks☆806Updated 10 months ago
- MACS -- Model-based Analysis of ChIP-Seq☆737Updated last month
- A list of interesting genome browser and genome visualization programs☆956Updated last week
- Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis inclu…☆1,371Updated last year
- Bioinformatics one liners from Ming Tang☆483Updated 4 years ago
- ChIP-seq analysis notes from Ming Tang☆794Updated 9 months ago
- List of software packages for multi-omics analysis☆780Updated 3 weeks ago
- Bioinformatics code libraries and scripts☆523Updated 3 months ago
- Analysis of single cell RNA-seq data course☆674Updated 3 years ago
- ☆391Updated 3 years ago
- The Leek group guide to genomics papers☆487Updated 6 years ago
- A curated list of resources for learning bioinformatics.☆476Updated 3 years ago
- Python for Bioinformatics☆254Updated 4 years ago
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆442Updated this week
- Near-optimal RNA-Seq quantification☆678Updated last month
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,073Updated last month
- Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.☆462Updated 2 weeks ago
- resources for learning bioinformatics☆1,026Updated 4 months ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆818Updated this week
- Trinity RNA-Seq de novo transcriptome assembly☆856Updated 3 months ago
- ☆443Updated 4 years ago
- Tools to process and analyze deep sequencing data.☆720Updated 2 weeks ago
- ☆360Updated 8 months ago