Alternatives and similar repositories for applied-computational-genomics

Users that are interested in applied-computational-genomics are comparing it to the libraries listed below

• crazyhottommy / getting-started-with-genomics-tools-and-resources
  Unix, R and python tools for genomics and data science
  ☆1,340Updated 3 months ago
• jdidion / biotools
  A list of useful bioinformatics resources
  ☆618Updated 7 months ago
• griffithlab / rnaseq_tutorial
  Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis inclu…
  ☆1,405Updated 2 years ago
• crazyhottommy / RNA-seq-analysis
  RNAseq analysis notes from Ming Tang
  ☆1,052Updated 4 years ago
• vsbuffalo / bds-files
  Supplementary files for my book, "Bioinformatics Data Skills"
  ☆703Updated 7 years ago
• crazyhottommy / ChIP-seq-analysis
  ChIP-seq analysis notes from Ming Tang
  ☆832Updated last year
• MultiQC / MultiQC
  Aggregate results from bioinformatics analyses across many samples into a single report.
  ☆1,396Updated last week
• cmdcolin / awesome-genome-visualization
  A list of interesting genome browser and genome visualization programs
  ☆1,032Updated 3 weeks ago
• nf-core / rnaseq
  RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
  ☆1,163Updated this week
• jtleek / genomicspapers
  The Leek group guide to genomics papers
  ☆498Updated 7 years ago
• crazyhottommy / bioinformatics-one-liners
  Bioinformatics one liners from Ming Tang
  ☆498Updated 5 years ago
• trinityrnaseq / trinityrnaseq
  Trinity RNA-Seq de novo transcriptome assembly
  ☆877Updated 10 months ago
• jorvis / biocode
  Bioinformatics code libraries and scripts
  ☆551Updated 4 months ago
• mikelove / awesome-multi-omics
  List of software packages for multi-omics analysis
  ☆879Updated last month
• tiagoantao / bioinf-python
  Python for Bioinformatics
  ☆262Updated 5 years ago
• macs3-project / MACS
  MACS -- Model-based Analysis of ChIP-Seq
  ☆763Updated last week
• deeptools / pyGenomeTracks
  python module to plot beautiful and highly customizable genome browser tracks
  ☆851Updated last year
• deeptools / deepTools
  Tools to process and analyze deep sequencing data.
  ☆746Updated 4 months ago
• lh3 / seqtk
  Toolkit for processing sequences in FASTA/Q formats
  ☆1,515Updated 6 months ago
• arq5x / bedtools2
  bedtools - the swiss army knife for genome arithmetic
  ☆1,011Updated 8 months ago
• hbctraining / DGE_workshop
  ☆403Updated 3 years ago
• hbctraining / In-depth-NGS-Data-Analysis-Course
  ☆442Updated 5 years ago
• hemberg-lab / scRNA.seq.course
  Analysis of single cell RNA-seq data course
  ☆674Updated 3 years ago
• pachterlab / kallisto
  Near-optimal RNA-Seq quantification
  ☆711Updated 2 weeks ago
• BioContainers / containers
  Bioinformatics containers
  ☆763Updated last month
• sib-swiss / training-collection
  Collection of bioinformatics training materials
  ☆1,079Updated last week
• openbiox / awosome-bioinformatics
  A curated list of resources for learning bioinformatics.
  ☆499Updated 3 years ago
• MareesAT / GWA_tutorial
  A comprehensive tutorial about GWAS and PRS
  ☆949Updated 2 years ago
• applied-bioinformatics / An-Introduction-To-Applied-Bioinformatics
  Interactive lessons in bioinformatics.
  ☆865Updated 4 years ago
• harvardinformatics / learning-bioinformatics-at-home
  resources for learning bioinformatics
  ☆1,307Updated 11 months ago