Applied Computational Genomics Course at UU: Spring 2020
☆1,132Apr 5, 2024Updated 2 years ago
Alternatives and similar repositories for applied-computational-genomics
Users that are interested in applied-computational-genomics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Unix, R and python tools for genomics and data science☆1,403Aug 25, 2025Updated last year
- Materials for Spring 2018 Applied Genomics Course☆80Jan 29, 2019Updated 7 years ago
- ☆75Jan 27, 2022Updated 4 years ago
- Code and examples for JHU Computational Genomics class☆316Oct 22, 2024Updated last year
- RNAseq analysis notes from Ming Tang☆1,097Nov 15, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Plot structural variant signals from many BAMs and CRAMs☆572Jul 13, 2024Updated 2 years ago
- The Leek group guide to genomics papers☆505Nov 5, 2018Updated 7 years ago
- Bioinformatics one liners from Ming Tang☆503Oct 4, 2020Updated 5 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆404Jun 16, 2026Updated 2 months ago
- JHU EN.600.649: Computational Genomics: Applied Comparative Genomics☆59Mar 8, 2018Updated 8 years ago
- Useful bash one-liners for bioinformatics.☆2,027Sep 9, 2023Updated 2 years ago
- Interval data structure☆234Mar 18, 2026Updated 5 months ago
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,848Updated this week
- karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome☆376Jul 6, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis inclu…☆1,436May 31, 2023Updated 3 years ago
- A list of useful bioinformatics resources☆640May 4, 2026Updated 4 months ago
- Population genetics notes☆703Jun 1, 2023Updated 3 years ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆874May 2, 2026Updated 4 months ago
- basic walk-throughs for alignment and variant calling from NGS sequencing data☆220Jan 10, 2025Updated last year
- Resource of human chromosome schematics & images☆96Sep 4, 2024Updated 2 years ago
- cython + htslib == fast VCF and BCF processing☆447Jun 25, 2026Updated 2 months ago
- ChIP-seq analysis notes from Ming Tang☆855Aug 5, 2024Updated 2 years ago
- conda recipes for genomic data☆84Jul 31, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- structural variant calling and genotyping with existing tools, but, smoothly.☆267Jun 17, 2024Updated 2 years ago
- resources for learning bioinformatics☆1,637Jan 8, 2025Updated last year
- A curated list of awesome Bioinformatics libraries and software.☆4,263Apr 7, 2026Updated 4 months ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,492Updated this week
- ☆448Jun 15, 2020Updated 6 years ago
- Detect novel (and reference) STR expansions from short-read data☆71Dec 6, 2025Updated 8 months ago
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆227Sep 18, 2025Updated 11 months ago
- Cloud-native genomic dataframes and batch computing☆1,070Updated this week
- A list of interesting genome browser and genome visualization programs☆1,103Jul 21, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- tools for working with genome variation graphs☆1,334Updated this week
- List of gene lists for genomic analyses.☆230Jun 24, 2022Updated 4 years ago
- Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis☆1,030Aug 24, 2024Updated 2 years ago
- Tools to process and analyze deep sequencing data.☆764Updated this week
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated last year
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆334Updated this week
- A list of deep learning implementations in biology☆2,157Aug 3, 2026Updated last month