Applied Computational Genomics Course at UU: Spring 2020
☆1,081Apr 5, 2024Updated 2 years ago
Alternatives and similar repositories for applied-computational-genomics
Users that are interested in applied-computational-genomics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Unix, R and python tools for genomics and data science☆1,381Aug 25, 2025Updated 8 months ago
- Materials for Spring 2018 Applied Genomics Course☆79Jan 29, 2019Updated 7 years ago
- ☆75Jan 27, 2022Updated 4 years ago
- Code and examples for JHU Computational Genomics class☆314Oct 22, 2024Updated last year
- RNAseq analysis notes from Ming Tang☆1,082Nov 15, 2021Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Plot structural variant signals from many BAMs and CRAMs☆567Jul 13, 2024Updated last year
- The Leek group guide to genomics papers☆502Nov 5, 2018Updated 7 years ago
- Bioinformatics one liners from Ming Tang☆500Oct 4, 2020Updated 5 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆401Aug 30, 2025Updated 8 months ago
- JHU EN.600.649: Computational Genomics: Applied Comparative Genomics☆59Mar 8, 2018Updated 8 years ago
- Useful bash one-liners for bioinformatics.☆2,009Sep 9, 2023Updated 2 years ago
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,722Updated this week
- karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome☆367Jun 6, 2025Updated 11 months ago
- Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis inclu…☆1,422May 31, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆847Apr 24, 2026Updated last week
- A list of useful bioinformatics resources☆631Updated this week
- Resource of human chromosome schematics & images☆95Sep 4, 2024Updated last year
- Population genetics notes☆698Jun 1, 2023Updated 2 years ago
- resources for learning bioinformatics☆1,413Jan 8, 2025Updated last year
- cython + htslib == fast VCF and BCF processing☆440Feb 23, 2026Updated 2 months ago
- ChIP-seq analysis notes from Ming Tang☆851Aug 5, 2024Updated last year
- basic walk-throughs for alignment and variant calling from NGS sequencing data☆218Jan 10, 2025Updated last year
- conda recipes for genomic data☆84Jul 31, 2021Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- structural variant calling and genotyping with existing tools, but, smoothly.☆264Jun 17, 2024Updated last year
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,446Apr 24, 2026Updated last week
- A curated list of awesome Bioinformatics libraries and software.☆4,009Apr 7, 2026Updated 3 weeks ago
- ☆446Jun 15, 2020Updated 5 years ago
- Detect novel (and reference) STR expansions from short-read data☆71Dec 6, 2025Updated 5 months ago
- Cloud-native genomic dataframes and batch computing☆1,056Updated this week
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆225Sep 18, 2025Updated 7 months ago
- A list of interesting genome browser and genome visualization programs☆1,070Updated this week
- Tools to process and analyze deep sequencing data.☆759Jul 23, 2025Updated 9 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis☆1,029Aug 24, 2024Updated last year
- List of gene lists for genomic analyses.☆228Jun 24, 2022Updated 3 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated 11 months ago
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆313Apr 24, 2026Updated last week
- Fast fusion detection using kallisto☆79Jun 11, 2025Updated 10 months ago
- A list of deep learning implementations in biology☆2,135Mar 4, 2026Updated 2 months ago
- tools for working with genome variation graphs☆1,307Updated this week