Deduplication based on custom inline DNA barcodes.
☆20Aug 17, 2018Updated 7 years ago
Alternatives and similar repositories for Connor
Users that are interested in Connor are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆15Jan 19, 2018Updated 8 years ago
- localised duplicate detection on patterned flow cells☆10Feb 27, 2019Updated 7 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆103Jul 24, 2026Updated 2 weeks ago
- ☆11May 21, 2024Updated 2 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Jun 26, 2017Updated 9 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Predicting oncogenic potential of gene fusions☆12Feb 13, 2016Updated 10 years ago
- Pipeline for generating RNAseq-based cancer patient reports☆15Jul 31, 2026Updated last week
- Tools for working with genomic and high throughput sequencing data.☆372Updated this week
- commandline manipulation of genomic variants and NGS reads☆19Sep 6, 2024Updated last year
- tools for adding mutations to existing .bam files, used for testing mutation callers☆251Updated this week
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆48May 7, 2019Updated 7 years ago
- iCAGES (integrated CAncer GEnome Score) is an effective tool for prioritizing cancer driver genes for a patient☆14Aug 18, 2022Updated 3 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Oct 31, 2019Updated 6 years ago
- Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data☆31Feb 7, 2026Updated 6 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Basic, no assumptions, multi-pileup☆24Mar 26, 2014Updated 12 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆28Jun 6, 2024Updated 2 years ago
- Hemang Parikh☆11Jan 12, 2016Updated 10 years ago
- CAVA (Clinical Annotation of VAriants)☆14Sep 28, 2018Updated 7 years ago
- ☆14Jun 2, 2026Updated 2 months ago
- JHU EN.600.649: Computational Genomics: Applied Comparative Genomics☆59Mar 8, 2018Updated 8 years ago
- Fast fusion detection using kallisto☆80Jun 11, 2025Updated last year
- Multi-sample somatic variant caller☆52Jan 27, 2022Updated 4 years ago
- ☆56Mar 31, 2020Updated 6 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- NuDup -- Marks/removes duplicate molecules based on the molecular tagging technology used in Tecan products.☆14Nov 19, 2019Updated 6 years ago
- Nanopore desc☆18Aug 22, 2016Updated 9 years ago
- Docker container for Illumina bcl2fastq☆13Aug 7, 2024Updated 2 years ago
- Detection of structural variants in cancer mate-pair and paired-end data☆13May 3, 2019Updated 7 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Dec 10, 2024Updated last year
- Tools for handling Unique Molecular Identifiers in NGS data sets☆549Jun 18, 2026Updated last month
- Python package to annotate and visualize gene fusions.☆66Apr 14, 2026Updated 3 months ago
- Scripts for creating a Kraken database from the Comprehensive Antibiotic Resistance Database☆10Dec 16, 2016Updated 9 years ago
- Coordinate job queue system, Go implementation☆29Apr 10, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Simplify snpEff annotations for interesting cases☆22Feb 18, 2019Updated 7 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆54Jun 5, 2017Updated 9 years ago
- Build complex types from simple blueprints with Pydantic☆26Feb 8, 2026Updated 6 months ago
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Dec 18, 2023Updated 2 years ago
- Python package for cancer early detection based on a model of cancer evolution and circulating tumor DNA (ctDNA) shedding☆13Jan 8, 2021Updated 5 years ago
- Convert genetic variants to minimal representation☆23Dec 8, 2017Updated 8 years ago
- Genome data visualizations☆226Jan 10, 2026Updated 7 months ago