umich-brcf-bioinf / ConnorLinks
Deduplication based on custom inline DNA barcodes.
☆21Updated 7 years ago
Alternatives and similar repositories for Connor
Users that are interested in Connor are comparing it to the libraries listed below
Sorting:
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- An awk-like VCF parser☆56Updated last year
- ☆78Updated 11 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆56Updated last week
- List of IARC bioinformatics pipelines and resources☆55Updated 3 weeks ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 5 years ago
- an empirical Bayesian framework for mutation detection from cancer genome sequencing data☆31Updated 9 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 7 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 3 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- BigWig and BAM utilities☆99Updated last year
- mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data☆39Updated 3 months ago
- Fast fusion detection using kallisto☆79Updated 6 months ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 5 years ago
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆54Updated 8 years ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- Analysis from kallisto paper☆32Updated 9 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆53Updated 3 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 7 months ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago