umich-brcf-bioinf / ConnorLinks
Deduplication based on custom inline DNA barcodes.
☆21Updated 7 years ago
Alternatives and similar repositories for Connor
Users that are interested in Connor are comparing it to the libraries listed below
Sorting:
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- An awk-like VCF parser☆56Updated last year
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Fast fusion detection using kallisto☆79Updated 4 months ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆53Updated this week
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆28Updated 4 months ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 5 years ago
- Thousand Variant Callers Project Repository☆73Updated 6 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- Concordance and contamination estimator for tumor–normal pairs☆58Updated 11 months ago
- ☆78Updated 11 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 5 years ago
- List of IARC bioinformatics pipelines and resources☆53Updated 3 months ago
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- an empirical Bayesian framework for mutation detection from cancer genome sequencing data☆31Updated 9 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- BigWig and BAM utilities☆97Updated last year
- A read extraction and realignment tool for next generation sequencing data☆103Updated 2 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆54Updated 8 years ago
- ☆95Updated 3 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 3 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- Maximum likelihood demultiplexing☆47Updated 8 months ago
- Tools for analyzing 10X Genomics data☆42Updated 6 years ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆124Updated 5 months ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago