umich-brcf-bioinf / ConnorView external linksLinks
Deduplication based on custom inline DNA barcodes.
☆21Aug 17, 2018Updated 7 years ago
Alternatives and similar repositories for Connor
Users that are interested in Connor are comparing it to the libraries listed below
Sorting:
- This Is Indian Country - Spring 2018 Instance☆12Apr 30, 2018Updated 7 years ago
- ☆15Jan 19, 2018Updated 8 years ago
- commandline manipulation of genomic variants and NGS reads☆19Sep 6, 2024Updated last year
- Scripts for creating a Kraken database from the Comprehensive Antibiotic Resistance Database☆10Dec 16, 2016Updated 9 years ago
- Python package for cancer early detection based on a model of cancer evolution and circulating tumor DNA (ctDNA) shedding☆13Jan 8, 2021Updated 5 years ago
- Pipeline for generating RNAseq-based cancer patient reports☆11Feb 4, 2026Updated last week
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Oct 31, 2019Updated 6 years ago
- Predicting oncogenic potential of gene fusions☆12Feb 13, 2016Updated 10 years ago
- localised duplicate detection on patterned flow cells☆10Feb 27, 2019Updated 6 years ago
- Hemang Parikh☆11Jan 12, 2016Updated 10 years ago
- This is the repository accompanying the pre-print titled, "Genome-wide analyses of 200,453 individuals yield new insights into the causes…☆13Jun 9, 2022Updated 3 years ago
- Detection of structural variants in cancer mate-pair and paired-end data☆13May 3, 2019Updated 6 years ago
- Multi-sample somatic variant caller☆52Jan 27, 2022Updated 4 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Jun 26, 2017Updated 8 years ago
- ☆57Mar 31, 2020Updated 5 years ago
- Fast fusion detection using kallisto☆79Jun 11, 2025Updated 8 months ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Jun 6, 2024Updated last year
- A Boolean Algebra for Genetic Variants☆12Updated this week
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Dec 18, 2023Updated 2 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49May 7, 2019Updated 6 years ago
- iCAGES (integrated CAncer GEnome Score) is an effective tool for prioritizing cancer driver genes for a patient☆14Aug 18, 2022Updated 3 years ago
- Simplify snpEff annotations for interesting cases☆22Feb 18, 2019Updated 6 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Dec 10, 2024Updated last year
- Structural Variation breakpoint discovery via adaptive learning☆16Jul 6, 2023Updated 2 years ago
- FLT3 ITD detection (ITDseek) and simulation (ITDsim)☆14Feb 27, 2019Updated 6 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆100Apr 20, 2021Updated 4 years ago
- Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data☆31Feb 7, 2026Updated last week
- Python package to annotate and visualize gene fusions.☆65Sep 30, 2024Updated last year
- JHU EN.600.649: Computational Genomics: Applied Comparative Genomics☆59Mar 8, 2018Updated 7 years ago
- Tools for working with genomic and high throughput sequencing data.☆353Jan 26, 2026Updated 2 weeks ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆38Jul 30, 2020Updated 5 years ago
- CAVA (Clinical Annotation of VAriants)☆14Sep 28, 2018Updated 7 years ago
- R package for extracting mutation signatures from a list of somatic mutations☆37Aug 9, 2019Updated 6 years ago
- Rust UMI Directional Adjacency Deduplicator☆15Nov 25, 2019Updated 6 years ago
- ☆16Jan 15, 2025Updated last year
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Mar 6, 2024Updated last year
- Benchmark structural variant calls against a reference set☆18Jan 26, 2026Updated 2 weeks ago
- A comprehensive toolkit for mutational signature analysis☆41Jul 19, 2024Updated last year
- Bedfile perturbation tool☆17Sep 29, 2025Updated 4 months ago