CAVA (Clinical Annotation of VAriants)
☆14Sep 28, 2018Updated 7 years ago
Alternatives and similar repositories for CAVA
Users that are interested in CAVA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆55Jan 11, 2023Updated 3 years ago
- CNV Rapid Aberration Detection And Reporting☆12Mar 2, 2021Updated 5 years ago
- Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are d…☆22Sep 24, 2018Updated 7 years ago
- ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data☆25Oct 30, 2025Updated 4 months ago
- Remove primer sequence from BAM alignments by soft-clipping☆30Dec 5, 2019Updated 6 years ago
- A fork of the project Excavator2 from sourceforge.☆10Jun 29, 2017Updated 8 years ago
- Interactive table from gemini output☆10Mar 5, 2019Updated 7 years ago
- Plot CNV data with a genome viewer in R☆15Apr 5, 2017Updated 8 years ago
- CLI to automate Nextflow pipeline testing☆12Dec 15, 2025Updated 3 months ago
- Microsatellite Analysis for Normal-Tumor InStability☆78Jul 14, 2022Updated 3 years ago
- Platypus Variant Caller☆108Jun 27, 2024Updated last year
- ☆46Nov 18, 2019Updated 6 years ago
- A tool to call somatic single nucleotide variants.☆41Aug 21, 2015Updated 10 years ago
- Visualization methods for omics dataset quality control☆10Jul 17, 2025Updated 8 months ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Mar 17, 2016Updated 10 years ago
- Allele frequency filtering for Mendelian variant discovery☆18Sep 27, 2016Updated 9 years ago
- ☆33May 2, 2022Updated 3 years ago
- Gene lists related to cancer immunotherapy☆14Sep 11, 2024Updated last year
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Jun 30, 2020Updated 5 years ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Oct 2, 2014Updated 11 years ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆18Jan 12, 2026Updated 2 months ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Mar 10, 2018Updated 8 years ago
- Computes various SV statistics☆14Oct 12, 2023Updated 2 years ago
- Structural Variation breakpoint discovery via adaptive learning☆17Jul 6, 2023Updated 2 years ago
- Machine learning use cases for teaching☆13Jul 12, 2017Updated 8 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Dec 31, 2025Updated 2 months ago
- Pipeline for generating RNAseq-based cancer patient reports☆11Mar 10, 2026Updated last week
- Lossless VCF compression☆21Mar 4, 2022Updated 4 years ago
- A nextflow pipeline for calling exome CNVs☆13Feb 24, 2026Updated 3 weeks ago
- MicrOSAtellite Instability Classifier☆15Dec 12, 2017Updated 8 years ago
- Rails application for storing and parsing clinical exome VCF files. Gene annotations can be retrieved via Biomart integration from Ensemb…☆10May 7, 2017Updated 8 years ago
- myVCF: a web-based platform for target and exome mutations data management☆21Apr 13, 2021Updated 4 years ago
- Predicting oncogenic potential of gene fusions☆13Feb 13, 2016Updated 10 years ago
- Terraform template to create AWS resources to execute jobs using nextflow☆22Mar 1, 2023Updated 3 years ago
- SVsim: a tool that generates synthetic Structural Variant calls as benchmarks to test/evaluate SV calling pipelines.☆18Dec 4, 2017Updated 8 years ago
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆11May 7, 2018Updated 7 years ago
- Calculate AUC based on GWAS summary statistics only☆10Jun 29, 2018Updated 7 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- ☆36Apr 13, 2024Updated last year