biocompute-objects / BCO_DocumentationLinks
Repository for documentation to support the IEEE 2791-2020 standard. Please see our home page for communications/publications:
☆17Updated last year
Alternatives and similar repositories for BCO_Documentation
Users that are interested in BCO_Documentation are comparing it to the libraries listed below
Sorting:
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 8 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 7 years ago
- hail-based pipelines for annotating variant callsets and exporting them to elasticsearch☆23Updated last week
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 7 years ago
- Scalable RNA-seq analysis☆73Updated 5 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- BigWig manpulation tools using libBigWig and htslib☆30Updated last year
- A server for maintaining high-throughput sequencing QC data☆13Updated 6 months ago
- What's The Function of these genes?☆22Updated 8 years ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 4 years ago
- CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens☆19Updated 6 years ago
- Toil workflows for common genomic pipelines☆33Updated 6 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆33Updated 8 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 5 years ago
- Request for comments on interchangeable bioinformatics containers☆39Updated 6 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 8 months ago
- A python tool for parsing pedigree files☆16Updated 8 years ago
- create a gemini-compatible database from a VCF☆55Updated 5 years ago
- CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria☆29Updated 2 months ago
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Updated 6 years ago
- Code to reproduce analyses from the sleuth paper☆16Updated 7 years ago
- Integrative visualization of multiple omic datasets onto KEGG pathways.☆11Updated 4 years ago
- R package for extracting mutation signatures from a list of somatic mutations☆37Updated 6 years ago
- Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are d…☆22Updated 7 years ago
- Analysis from kallisto paper☆32Updated 9 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 7 years ago
- Response to blog post about Salmon☆37Updated 8 years ago
- PathOS is a clinical application for filtering, analysing and reporting on NGS variants☆29Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago