brentp / 450k-analysis-guideLinks
A Practical (And Opinionated) Guide To Analyzing 450K Data
β35Updated 11 years ago
Alternatives and similar repositories for 450k-analysis-guide
Users that are interested in 450k-analysis-guide are comparing it to the libraries listed below
Sorting:
- AnaLysis routines for ePigenomicS data - π« Bioconductor projectβ16Updated 2 years ago
- Tutorial for working with cloud infrastructure and AWS from Rβ20Updated 8 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objectsβ43Updated 3 months ago
- An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)β16Updated 13 years ago
- Modeling and correcting fragment sequence bias for RNA-seqβ24Updated last year
- TOP results by CONfident efFECT Sizes.β14Updated 10 months ago
- R package for extracting mutation signatures from a list of somatic mutationsβ37Updated 6 years ago
- R Interface to the NCBI SRA metadataβ23Updated 6 years ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)β19Updated 7 years ago
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflowsβ17Updated 3 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logosβ27Updated 6 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in Rβ31Updated 3 weeks ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq dataβ26Updated 2 weeks ago
- Glimma R packageβ50Updated last year
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.β35Updated 2 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platformsβ18Updated 2 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.β29Updated last year
- Bioconductor package that makes BIG data pint-sized.β21Updated last year
- Transcript quantification import with automatic metadata detectionβ67Updated 2 weeks ago
- Machine learning use cases for teachingβ13Updated 8 years ago
- Toolkit for QTL mapping and meta-analysis.β17Updated 3 years ago
- A small R package to make sequencing read coverage plots in R.β39Updated 2 weeks ago
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infereβ¦β11Updated 8 years ago
- The official repository of the Bioconductor 2019 Conference Workshopsβ24Updated 2 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"β16Updated 6 years ago
- Lollipop-diagram to interactively visualize genetic mutationsβ33Updated last year
- β29Updated last year
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.β23Updated 6 years ago
- HOT regions paperβ11Updated 6 years ago
- Tools for visualizing genomics dataβ69Updated 4 years ago