BenLangmead / comp-genomics-class
Code and examples for JHU Computational Genomics class
☆298Updated 3 months ago
Alternatives and similar repositories for comp-genomics-class:
Users that are interested in comp-genomics-class are comparing it to the libraries listed below
- Python for Bioinformatics☆250Updated 4 years ago
- Efficient pythonic random access to fasta subsequences☆464Updated 4 months ago
- Tools to process and analyze deep sequencing data.☆697Updated this week
- Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl☆388Updated 8 months ago
- Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")☆312Updated last month
- Data and analysis for NA12878 genome on nanopore☆379Updated 2 years ago
- Haplotype VCF comparison tools☆421Updated last year
- Java utilities for Bioinformatics☆492Updated last week
- A basic introduction to Biopython, intended for a classroom based workshop☆218Updated 4 years ago
- Viral genomics analysis pipelines☆192Updated 5 months ago
- Bioinformatics Workbook repository☆181Updated 3 weeks ago
- cython + htslib == fast VCF and BCF processing☆390Updated 5 months ago
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆321Updated this week
- Customizable workflows based on snakemake and python for the analysis of NGS data☆393Updated last week
- Differential analysis of RNA-Seq☆305Updated 7 months ago
- A list of useful bioinformatics resources☆595Updated last year
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆457Updated last month
- A collection of scripts and notes related to genomics and bioinformatics☆204Updated last week
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆380Updated 2 months ago
- Performant Pythonic GenomicRanges☆453Updated 8 months ago
- Incubator for useful bioinformatics code, primarily in Python and R☆614Updated 2 weeks ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆797Updated this week
- Strelka2 germline and somatic small variant caller☆364Updated 3 years ago
- Transcript assembly and quantification for RNA-Seq☆412Updated this week
- A comparison of different Oxford Nanopore basecallers☆315Updated 5 years ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆237Updated 4 months ago
- Plot structural variant signals from many BAMs and CRAMs☆538Updated 7 months ago
- lumpy: a general probabilistic framework for structural variant discovery☆319Updated 2 years ago
- C++ API & command-line toolkit for working with BAM data☆423Updated 7 months ago
- Count bases in BAM/CRAM files☆312Updated 3 years ago