BenLangmead / comp-genomics-class

Related projects ⓘ

Alternatives and complementary repositories for comp-genomics-class

• tiagoantao / bioinf-python
  Python for Bioinformatics
  ☆247Updated 4 years ago
• lindenb / jvarkit
  Java utilities for Bioinformatics
  ☆485Updated this week
• deeptools / deepTools
  Tools to process and analyze deep sequencing data.
  ☆684Updated last month
• Illumina / strelka
  Strelka2 germline and somatic small variant caller
  ☆357Updated 2 years ago
• jdidion / biotools
  A list of useful bioinformatics resources
  ☆587Updated last year
• adamewing / bamsurgeon
  tools for adding mutations to existing .bam files, used for testing mutation callers
  ☆233Updated last month
• Illumina / hap.py
  Haplotype VCF comparison tools
  ☆420Updated 11 months ago
• openvax / pyensembl
  Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl
  ☆382Updated 5 months ago
• pyranges / pyranges
  Performant Pythonic GenomicRanges
  ☆443Updated 5 months ago
• RealTimeGenomics / rtg-tools
  RTG Tools: Utilities for accurate VCF comparison and manipulation
  ☆301Updated 5 months ago
• macarthur-lab / gene_lists
  List of gene lists for genomic analyses.
  ☆216Updated 2 years ago
• daler / pybedtools
  Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")
  ☆310Updated 2 weeks ago
• hall-lab / speedseq
  A flexible framework for rapid genome analysis and interpretation
  ☆315Updated 2 years ago
• dellytools / delly
  DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
  ☆444Updated 3 weeks ago
• peterjc / biopython_workshop
  A basic introduction to Biopython, intended for a classroom based workshop
  ☆215Updated 4 years ago
• maxplanck-ie / snakepipes
  Customizable workflows based on snakemake and python for the analysis of NGS data
  ☆389Updated this week
• ISUgenomics / bioinformatics-workbook
  Bioinformatics Workbook repository
  ☆176Updated this week
• CGATOxford / UMI-tools
  Tools for handling Unique Molecular Identifiers in NGS data sets
  ☆491Updated last month
• mdshw5 / pyfaidx
  Efficient pythonic random access to fasta subsequences
  ☆460Updated last month
• OpenGene / AfterQC
  Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
  ☆207Updated 4 years ago
• aquaskyline / Clairvoyante
  Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing
  ☆171Updated 10 months ago
• genome / bam-readcount
  Count bases in BAM/CRAM files
  ☆305Updated 2 years ago
• hbctraining / In-depth-NGS-Data-Analysis-Course
  ☆438Updated 4 years ago
• crazyhottommy / bioinformatics-one-liners
  Bioinformatics one liners from Ming Tang
  ☆455Updated 4 years ago
• saketkc / pysradb
  Package for fetching metadata and downloading data from SRA/ENA/GEO
  ☆312Updated 3 weeks ago
• BenLangmead / ads1-slides
  Slides for Algorithms for DNA Sequencing Coursera class
  ☆321Updated 9 years ago
• kundajelab / atac_dnase_pipelines
  ATAC-seq and DNase-seq processing pipeline
  ☆162Updated 2 years ago
• shenlab-sinai / ngsplot
  Quick mining and visualization of NGS data by integrating genomic databases
  ☆259Updated last year
• lh3 / wgsim
  Reads simulator
  ☆263Updated 3 years ago