BenLangmead / comp-genomics-classLinks
Code and examples for JHU Computational Genomics class
☆301Updated 8 months ago
Alternatives and similar repositories for comp-genomics-class
Users that are interested in comp-genomics-class are comparing it to the libraries listed below
Sorting:
- Python for Bioinformatics☆256Updated 4 years ago
- Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")☆321Updated 3 months ago
- cython + htslib == fast VCF and BCF processing☆403Updated 9 months ago
- Tools to process and analyze deep sequencing data.☆722Updated last month
- bedtools - the swiss army knife for genome arithmetic☆981Updated 3 months ago
- Performant Pythonic GenomicRanges☆474Updated 3 months ago
- Haplotype VCF comparison tools☆434Updated last year
- Fast genome and metagenome distance estimation using MinHash☆411Updated last year
- A list of useful bioinformatics resources☆606Updated last month
- A One-Click System for Analyzing Loop-Resolution Hi-C Experiments☆446Updated 7 months ago
- List of gene lists for genomic analyses.☆221Updated 3 years ago
- ☆279Updated 4 months ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆397Updated 3 weeks ago
- Count bases in BAM/CRAM files☆319Updated 3 years ago
- Java utilities for Bioinformatics☆503Updated last week
- Strelka2 germline and somatic small variant caller☆372Updated 3 years ago
- python module to plot beautiful and highly customizable genome browser tracks☆820Updated 11 months ago
- A fast multi-threaded k-mer counter☆502Updated last year
- Slides for Algorithms for DNA Sequencing Coursera class☆332Updated 9 years ago
- A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.☆314Updated 3 months ago
- Plot structural variant signals from many BAMs and CRAMs☆544Updated 11 months ago
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆442Updated last year
- ☆316Updated 5 years ago
- Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk…☆294Updated 6 years ago
- Efficient pythonic random access to fasta subsequences☆473Updated 3 weeks ago
- Data and analysis for NA12878 genome on nanopore☆392Updated 2 years ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆319Updated last month
- Graph-based alignment (Hierarchical Graph FM index)☆502Updated 7 months ago
- Differential analysis of RNA-Seq☆304Updated 3 weeks ago
- C++ API & command-line toolkit for working with BAM data☆425Updated last month