BenLangmead / comp-genomics-classLinks
Code and examples for JHU Computational Genomics class
☆304Updated 10 months ago
Alternatives and similar repositories for comp-genomics-class
Users that are interested in comp-genomics-class are comparing it to the libraries listed below
Sorting:
- Python for Bioinformatics☆259Updated 4 years ago
- A basic introduction to Biopython, intended for a classroom based workshop. Now on Codeberg.☆222Updated 5 years ago
- A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.☆316Updated 5 months ago
- Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")☆323Updated 5 months ago
- List of gene lists for genomic analyses.☆222Updated 3 years ago
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆211Updated 5 years ago
- Tools to process and analyze deep sequencing data.☆734Updated last month
- a toolkit for working with Oxford nanopore data☆246Updated 2 years ago
- Bioinformatics Workbook repository☆191Updated last week
- Slides for Algorithms for DNA Sequencing Coursera class☆338Updated 9 years ago
- Count bases in BAM/CRAM files☆319Updated 3 years ago
- awesome-bio-datasets☆233Updated 7 years ago
- Differential analysis of RNA-Seq☆305Updated 3 months ago
- A collection of scripts and notes related to genomics and bioinformatics☆217Updated this week
- Strelka2 germline and somatic small variant caller☆377Updated 3 years ago
- Fast genome and metagenome distance estimation using MinHash☆418Updated last year
- Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo sh…☆293Updated 7 years ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆204Updated 4 years ago
- A list of useful bioinformatics resources☆614Updated 4 months ago
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆338Updated this week
- Efficient pythonic random access to fasta subsequences☆479Updated last week
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆450Updated last year
- BEDOPS: high-performance genomic feature operations☆351Updated 4 months ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆396Updated 2 weeks ago
- C++ API & command-line toolkit for working with BAM data☆429Updated 3 months ago
- Reads simulator☆282Updated 3 years ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆273Updated last year
- UCSC command line bioinformatic utilities☆184Updated last year
- A flexible framework for rapid genome analysis and interpretation☆317Updated 2 years ago
- This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.☆243Updated 2 years ago