vallotlab / scChIPseqLinks
Analysis of single-cell ChIP-seq datasets : From count matrices to differential analysis
☆20Updated 5 years ago
Alternatives and similar repositories for scChIPseq
Users that are interested in scChIPseq are comparing it to the libraries listed below
Sorting:
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 5 months ago
- ☆48Updated 5 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- R package of colors for the Buenrostro Lab☆84Updated 11 months ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- ConsensusTME Gene Sets and R Script☆39Updated last year
- R/Bioconductor package for working with 10x scATACseq data☆40Updated last year
- ☆55Updated 4 years ago
- ☆47Updated 7 months ago
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- R package with motifs for use with chromVAR☆28Updated 7 years ago
- Repo for website and other code for mouse sci-ATAC-seq project☆28Updated 4 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆55Updated 4 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Updated 5 years ago
- scRNA-seq cell type identification☆43Updated 5 years ago
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated 2 years ago
- ☆41Updated 4 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆74Updated 2 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆60Updated last month
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆46Updated last year
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- An r package that works as a wrapper to homologene☆46Updated last year
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- An R package to analyze single-cell V(D)J data☆28Updated last year