vallotlab / scChIPseq
Analysis of single-cell ChIP-seq datasets : From count matrices to differential analysis
☆20Updated 4 years ago
Alternatives and similar repositories for scChIPseq
Users that are interested in scChIPseq are comparing it to the libraries listed below
Sorting:
- Harvard FAS informatics scRNAseq workshop website☆37Updated 5 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Filtering of PDX samples for mouse derived reads☆27Updated 2 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆12Updated 6 years ago
- ☆38Updated 2 years ago
- Docker container for genomics analyses in R.☆24Updated last year
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- workshop website on readthedocs☆19Updated 2 weeks ago
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated 2 years ago
- An R package to analyze single-cell V(D)J data☆25Updated last year
- ☆34Updated 5 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- Toolbox with R scripts☆38Updated 6 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 3 years ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 2 weeks ago
- documentation for trackViewer☆29Updated 5 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆57Updated last month
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆32Updated 3 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- ☆16Updated 6 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- ☆49Updated 9 months ago
- Clone identification from single-cell data☆61Updated 2 years ago