Analysis of single-cell ChIP-seq datasets : From count matrices to differential analysis
☆20Jun 2, 2020Updated 5 years ago
Alternatives and similar repositories for scChIPseq
Users that are interested in scChIPseq are comparing it to the libraries listed below
Sorting:
- ☆10Jan 21, 2023Updated 3 years ago
- Open source tools and papers for structural variant analysis.☆12Feb 24, 2019Updated 7 years ago
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆12Dec 6, 2021Updated 4 years ago
- Functions to analyze copy number aberrations in single-cell data☆13Feb 3, 2025Updated last year
- Preprocessing pipeline for (sc)ATAC data☆10Feb 22, 2022Updated 4 years ago
- Tools for working with WGBS data☆14Jul 3, 2017Updated 8 years ago
- Analysis Pipeline for Single Cell ATAC-seq☆321Apr 27, 2023Updated 2 years ago
- ☆18May 12, 2023Updated 2 years ago
- gkmSVM R package☆17Jan 15, 2018Updated 8 years ago
- GEO RNA-seq Experiments Processing Pipeline☆22Oct 25, 2019Updated 6 years ago
- Repository for supplemental material of manuscripts☆19Jun 30, 2021Updated 4 years ago
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆21Mar 16, 2022Updated 3 years ago
- Single Cell multimodal data scripts for downloading datasets☆18Nov 17, 2025Updated 3 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Sep 1, 2023Updated 2 years ago
- This is the package of Yuanfang's winning algorithm in the ENCODE-DREAM in vivo Transcription Factor Binding Site Prediction Challenge☆20Jun 11, 2020Updated 5 years ago
- Mapping Alternative Splicing Events to pRoteins☆21Feb 8, 2022Updated 4 years ago
- Integrating LASSO and bootstrapping algorithm to find best prognostic or predictive biomarkers☆21Oct 12, 2022Updated 3 years ago
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Jun 13, 2022Updated 3 years ago
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆45Dec 17, 2025Updated 2 months ago
- Quantifying copy number signatures from absolute copy number profiles☆26Jul 23, 2025Updated 7 months ago
- ☆19Feb 23, 2022Updated 4 years ago
- A web tool to do automatic spots detections and positional adjustments for Spatial Transcriptomics Datasets.☆25Nov 17, 2022Updated 3 years ago
- Code to reproduce TNBC analysis and figures☆24Jun 13, 2022Updated 3 years ago
- This repository contains HCA Benchmarking codes☆26Nov 11, 2019Updated 6 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Apr 29, 2020Updated 5 years ago
- Workflow for Sequenza, cellularity and ploidy☆26Aug 19, 2025Updated 6 months ago
- An R package to construct Elastic Principal Graphs☆24Nov 29, 2019Updated 6 years ago
- Inferring CNV data from single cell ATAC seq☆25Jun 24, 2025Updated 8 months ago
- Visualization of multiple tandem mass spectrometry data☆10Jun 15, 2020Updated 5 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Sep 16, 2019Updated 6 years ago
- ☆25Feb 2, 2024Updated 2 years ago
- fast webservices based query tool for large sets of genomic features☆25May 10, 2025Updated 9 months ago
- Particle dynamics and simulated annealing for chromosome structure calculation☆28Mar 15, 2024Updated last year
- 本仓库主要用于讨论李俊慧老师的《经济学讲义》、文章以及张五常老师的《经济解释》☆10Jun 2, 2020Updated 5 years ago
- Bead-based single-cell atac processing☆33Nov 13, 2021Updated 4 years ago
- R package with motifs for use with chromVAR☆29Nov 17, 2017Updated 8 years ago
- BiocompR is a R package build upon ggplot2 to improve commonly used plots dedicated to data comparison, dataset exploration and, ultimate…☆18Jan 15, 2025Updated last year
- ☆71Aug 16, 2022Updated 3 years ago
- My Self-Study Room: keep tidy and lightweight☆30Apr 25, 2024Updated last year