Alternatives and similar repositories for portfolio

Users that are interested in portfolio are comparing it to the libraries listed below

• brennanpincardiff / drawProteins
  Creating package to draw proteins from Uniprot API
  ☆35Updated last year
• uc-bd2k / GREIN
  GREIN : GEO RNA-seq Experiments Interactive Navigator
  ☆50Updated 6 years ago
• databio2022 / GraphBio
  GraphBio: a shiny web app to easily perform popular visualization analysis for omics data
  ☆33Updated 2 years ago
• biocswirl-dev-team / BiocSwirl
  BiocSwirl is a series of in-depth swirlify generated courses used to teach bioinformatics workflows in R/Bioconductor using an interactiv…
  ☆30Updated 4 years ago
• carpentries-incubator / workflows-nextflow
  Workflow management with Nextflow and nf-core
  ☆25Updated 8 months ago
• crazyhottommy / compbio_resources_chatomics
  ☆27Updated 2 years ago
• NIGMS / NIGMS-Sandbox
  Collection of cloud-based biomedical data science learning modules funded by the National Institute of General Medical Sciences at the NI…
  ☆78Updated 3 months ago
• crazyhottommy / machine-learning-resource
  ☆83Updated 9 months ago
• immunitastx / coding_exercise_TCGA_infiltration
  coding exercise using TCGA immune infiltration data
  ☆46Updated last year
• kuijjerlab / retriever
  Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data
  ☆15Updated 3 years ago
• jpquast / ggplate
  Create Layout Plots of Biological Culture Plates and Microplates
  ☆99Updated 11 months ago
• gregpoore / tcga_rebuttal
  Re-analysis of data provided by Gihawi et al. 2023 bioRxiv
  ☆26Updated 2 years ago
• cxli233 / customized_upset_plots
  Make customized upset plots: from raw data to plots
  ☆61Updated 2 weeks ago
• interactivereport / xOmicsShiny
  xOmicsShiny: an R Shiny application for cross-omics data analysis and pathway mapping, Bioinformatics Advances, Volume 5, Issue 1, 2025, …
  ☆32Updated last month
• 123xiaochen / VCFshiny
  ☆29Updated 11 months ago
• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆62Updated 2 months ago
• griffithlab / genviz.org
  Genomic data interpretation and visualization Workshop
  ☆21Updated this week
• frattalab / splicing
  Snakemake pipeline for running MAJIQ
  ☆23Updated last year
• barreiro-r / fastqc-viz
  A modest re-desing update for the classic FastQC report.
  ☆28Updated 2 weeks ago
• sib-swiss / glittr
  A web application for finding and comparing bioinformatics training materials on GitHub and GitLab
  ☆42Updated last month
• mikelove / preNivolumabOnNivolumab
  EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment
  ☆55Updated 2 years ago
• js2264 / tidyCoverage
  ☆22Updated last year
• interactivereport / Quickomics
  Quickomics: exploring omics data in an intuitive, interactive and informative manner. Bioinformatics. 2021 Apr 26:btab255.
  ☆41Updated 2 weeks ago
• crazyhottommy / oneliner_100day_challenge
  Bioinformatics one-liner for 100 days
  ☆49Updated last year
• neurogenomics / orthogene
  🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 �…
  ☆44Updated 6 months ago
• stephenturner / mergelanes
  Merge fastq files split over lanes
  ☆20Updated 7 years ago
• nickhir / GermlineMutationCalling
  An adaptable Snakemake workflow which uses GATKs best practice recommendations to perform germline mutation calling starting with BAM fil…
  ☆11Updated 4 years ago
• crazyhottommy / reproduce_genomics_paper_figures
  step by step tutorial in the website
  ☆25Updated 7 months ago
• schatzlab / scikit-ribo
  Accurate estimation and robust modelling of translation dynamics at codon resolution
  ☆20Updated 8 years ago
• nf-core / rnasplice
  rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis
  ☆57Updated 3 months ago