Alternatives and similar repositories for InterMineR

Users that are interested in InterMineR are comparing it to the libraries listed below

• lindsayrutter / bigPint
  Bioconductor package that makes BIG data pint-sized.
  ☆21Updated last year
• jorainer / ensembldb
  This is the ensembldb development repository.
  ☆35Updated last week
• thelovelab / tximeta
  Transcript quantification import with automatic metadata detection
  ☆68Updated this week
• Shians / Glimma
  Glimma R package
  ☆50Updated 11 months ago
• salmonteam / SalmonBlogResponse
  Response to blog post about Salmon
  ☆37Updated 7 years ago
• lpantano / DEGreport
  Create a cromphensive report of DEG list coming from any analysis of RNAseq data
  ☆25Updated last year
• kkdey / Logolas
  R package for Enrichment Depletion Logos (EDLogos) and String Logos
  ☆27Updated 6 years ago
• PhanstielLab / Sushi
  Tools for visualizing genomics data
  ☆69Updated 3 years ago
• BIMSBbioinfo / pigx_rnaseq
  Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline
  ☆20Updated 8 months ago
• UMMS-Biocore / debrowser
  Differential Count Data Analysis Toolbox
  ☆61Updated last year
• mahmoudibrahim / JAMM
  JAMM Peak Finder for Sequencing Datasets
  ☆29Updated 5 years ago
• simonvh / fluff
  Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…
  ☆71Updated last year
• lawremi / rtracklayer
  R interface to genome annotation files and the UCSC genome browser
  ☆35Updated last month
• seandavi / SRAdbV2
  R Interface to the NCBI SRA metadata
  ☆23Updated 6 years ago
• kauralasoo / wiggleplotr
  A small R package to make sequencing read coverage plots in R.
  ☆39Updated 3 years ago
• carpentries-incubator / bioc-project
  Introduction to the Bioconductor project
  ☆18Updated last week
• Bioconductor / BuildABiocWorkshop
  Template for building a bioconductor workshop package using github actions
  ☆21Updated 2 months ago
• nuno-agostinho / psichomics
  Interactive R package to quantify, analyse and visualise alternative splicing
  ☆37Updated this week
• jtleek / sva-devel
  ☆29Updated last year
• ejfertig / NSFBiosketch
  R markdown file to extract list of collaborators and affiliations from pubmed for NSF biosketch
  ☆38Updated 8 years ago
• Przemol / seqplots
  SeqPlots - An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and he…
  ☆87Updated 3 years ago
• mikelove / alpine
  Modeling and correcting fragment sequence bias for RNA-seq
  ☆24Updated last year
• statOmics / zingeR
  zero-inflated negative binomial gene expression in R
  ☆20Updated 7 years ago
• sk-sahu / sig-bio-shiny
  A standalone interactive application for detecting biological significance on a set of genes
  ☆40Updated 4 years ago
• ctb / 2019-snakemake-ucdavis
  Intro to workflows for efficient automated data analysis, using snakemake.
  ☆32Updated 6 years ago
• BIMSBbioinfo / genomation
  R package for genomic feature analysis and visualization
  ☆79Updated 4 months ago
• BaderLab / EnrichmentMapApp
  The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.
  ☆35Updated 10 months ago
• drpowell / degust
  An interactive web-tool for RNA-seq analysis
  ☆68Updated 6 months ago
• gladkia / igvShiny
  An htmlwidget version of igv, for RStudio and Shiny apps
  ☆38Updated 9 months ago
• zhanxw / seqminer
  Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R
  ☆31Updated 10 months ago