Accio / KEGGgraph
The KEGGgraph package to parse KEGG pathways in R into graph objects
β13Updated last year
Alternatives and similar repositories for KEGGgraph:
Users that are interested in KEGGgraph are comparing it to the libraries listed below
- AnaLysis routines for ePigenomicS data - π« Bioconductor projectβ16Updated last year
- BANDITS: Bayesian ANalysis of DIfferenTial Splicingβ17Updated last year
- πΆ hlabud: HLA genotype analysis in Rβ16Updated 2 weeks ago
- Interactive benchmarking of ranking and assignment methodsβ14Updated last month
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"β16Updated 5 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.β28Updated 6 months ago
- SCASA: Single cell transcript quantification toolβ20Updated last year
- Explore the cancer relevance of your gene listβ49Updated 5 months ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seqβ31Updated 4 years ago
- Gene-level general linear mixed modelβ19Updated last month
- β13Updated last year
- TFregulomeR reveals transcription factorsβ context-specific features and functionsβ16Updated 2 years ago
- Single Cell multimodal data scripts for downloading datasetsβ17Updated 3 months ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.β17Updated last month
- HOT regions paperβ11Updated 5 years ago
- β14Updated 5 years ago
- Interpretation of RNAseq experiments through robust, efficient comparison to public databasesβ16Updated 3 months ago
- Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.β12Updated last year
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.β28Updated 4 years ago
- Machine learning use cases for teachingβ13Updated 7 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.β16Updated 6 years ago
- R Interface to the NCBI SRA metadataβ23Updated 6 years ago
- interactive plots for differential expression analysisβ29Updated this week
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.β10Updated last year
- Isoform-level expression patterns in single-cell RNA-sequencing dataβ11Updated last year
- A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R librariesβ18Updated 5 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq dataβ24Updated 11 months ago
- Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and usingβ¦β14Updated last month
- R vignettes for processing BUS format single-cell RNA-seq filesβ20Updated 5 years ago
- An alignment and analysis pipeline for Ribosome Profiling and RNA-seq dataβ13Updated 7 months ago