Accio / KEGGgraphLinks
The KEGGgraph package to parse KEGG pathways in R into graph objects
☆14Updated 9 months ago
Alternatives and similar repositories for KEGGgraph
Users that are interested in KEGGgraph are comparing it to the libraries listed below
Sorting:
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆21Updated 3 months ago
- Gene-level general linear mixed model☆24Updated 4 months ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- Explore the cancer relevance of your gene list☆52Updated last month
- This is the ensembldb development repository.☆36Updated 5 months ago
- rbioapi: User-Friendly R Interface to Biologic Web Services' API☆23Updated 2 weeks ago
- GEO RNA-seq Experiments Processing Pipeline☆22Updated 6 years ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆30Updated 2 years ago
- 16S rRNA Sequencing Data from the Human Microbiome Project☆10Updated 3 months ago
- Single Cell multimodal data scripts for downloading datasets☆18Updated 2 months ago
- R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)☆24Updated 8 months ago
- The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.☆35Updated last year
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Updated 5 years ago
- Machine learning use cases for teaching☆13Updated 8 years ago
- TFregulomeR reveals transcription factors’ context-specific features and functions☆15Updated 3 years ago
- 🐶 hlabud: HLA genotype analysis in R☆17Updated 9 months ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆19Updated 4 months ago
- CircRNA testing and ploting R package☆10Updated 5 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Updated 4 years ago
- Molecular Signatures Database (MSigDB) in a data frame☆16Updated 7 years ago
- Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.☆13Updated 2 years ago
- Interactive benchmarking of ranking and assignment methods☆16Updated last month
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆27Updated 3 months ago
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆28Updated 2 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Updated 2 months ago
- Toolbox package for organizing and working with TCGA data☆28Updated last month
- interactive plots for differential expression analysis☆34Updated 7 months ago
- Detecting Aberrant Splicing Events from RNA-sequencing data☆16Updated last year
- R package for benchmarking single cell analysis methods☆32Updated 2 years ago