Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Available via pip package vollseg.
☆34Oct 8, 2025Updated 5 months ago
Alternatives and similar repositories for VollSeg
Users that are interested in VollSeg are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Process and analyze surfaces using vedo in napari.☆25May 13, 2024Updated last year
- ☆15Jul 29, 2022Updated 3 years ago
- ilastik plugin for napari☆15Mar 2, 2026Updated 3 weeks ago
- Use Napari Viewer to display CZI images☆11May 25, 2022Updated 3 years ago
- ☆217Feb 4, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Mar 11, 2026Updated 2 weeks ago
- A minimalistic napari plugin to create and save regions of interest and annotations on series of images☆18Apr 8, 2025Updated 11 months ago
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆91Jan 14, 2026Updated 2 months ago
- Interactive surface analysis in napari for bio-mechanical stress measurement☆18Updated this week
- Optimize image processing workflows in napari☆17May 1, 2025Updated 10 months ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆20Feb 10, 2026Updated last month
- Google Colab notebook for Cellpose☆10Aug 21, 2025Updated 7 months ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Mar 4, 2026Updated 3 weeks ago
- Benchmarking Yolov2, Faster-RCNN and Shape-Priors-CNN on dendritic spines detection☆11Nov 3, 2019Updated 6 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Accelerated Pixel and Object Classifiers (APOC)☆61Jul 18, 2025Updated 8 months ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Jun 5, 2024Updated last year
- A collection of useful python utilities from True North Intelligent Algorithms☆43Feb 2, 2026Updated last month
- Imagej toolset to ease hyperstacks visualization and handling☆23Feb 9, 2026Updated last month
- ☆24Aug 27, 2020Updated 5 years ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆25Nov 25, 2025Updated 4 months ago
- Cell tracking and segmentation software☆174Mar 20, 2026Updated last week
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Sep 11, 2021Updated 4 years ago
- A plugin that enables image segmentation provided by Allen Institute for Cell Science☆19Nov 18, 2025Updated 4 months ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆26Jul 22, 2024Updated last year
- 3D shape analysis using deep learning☆31Oct 8, 2025Updated 5 months ago
- A set of Qt-based widgets onto the pymmcore-plus model☆20Mar 17, 2026Updated last week
- Rust extension module for FIJI-like colormapping and channel blending☆19Feb 9, 2026Updated last month
- Implementation of multiplex Leiden for analysis of spatial omics data☆18Feb 2, 2026Updated last month
- computer vision models for single-cell phenotyping☆88Updated this week
- some useful function to get Label from ROIs and vice versa , and more!☆11May 3, 2023Updated 2 years ago
- A relabeling tool for tiled segmentation with Dask☆17Sep 24, 2024Updated last year
- ☆13Aug 16, 2024Updated last year
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Jupyter notebooks for CellProfiler and friends☆14Mar 23, 2018Updated 8 years ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30May 1, 2025Updated 10 months ago
- A napari plugin for clustering objects according to their properties.☆90Updated this week
- Denoising via adaptive binning.☆13Jan 6, 2026Updated 2 months ago
- Segment Anything for Microscopy☆668Updated this week
- General Image Analysis of Nuclei-containing Images☆10Jul 11, 2025Updated 8 months ago
- Development of PICASSO plugin for napari☆16Jan 17, 2023Updated 3 years ago