Kapoorlabs-CAPED / VollSegLinks
Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Available via pip package vollseg.
☆33Updated 3 weeks ago
Alternatives and similar repositories for VollSeg
Users that are interested in VollSeg are comparing it to the libraries listed below
Sorting:
- A napari plugin for clustering objects according to their properties.☆87Updated this week
- Guides and code for 3D nuclear instance segmentation☆22Updated 2 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆56Updated last month
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆74Updated 4 months ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆80Updated this week
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆55Updated 10 months ago
- Cell tracking and segmentation software☆134Updated 2 weeks ago
- A platform for compiling, analyzing, and exploring tracking data☆47Updated last week
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 11 months ago
- StarDist plugin for napari☆40Updated last year
- MiC is an ImageJ plugin to compare segmentation masks☆19Updated 2 months ago
- Track and lineage visualization with btrack and Napari☆45Updated 10 months ago
- Accurate and efficient spot detection for microscopy data☆95Updated 2 weeks ago
- ☆24Updated 2 years ago
- ☆23Updated 2 months ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Updated last year
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆28Updated 3 months ago
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆82Updated last week
- ☆87Updated 5 months ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 6 months ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆78Updated 2 weeks ago
- ☆51Updated 3 months ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 9 months ago
- GPU-accelerated Image Processing library for Python☆51Updated this week
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆143Updated 2 months ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆17Updated last month
- Process and analyze surfaces using vedo in napari.☆24Updated last year
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆44Updated 3 months ago
- Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop betwee…☆38Updated last year