almeidasilvaf / BioNERO
Easy and comprehensive biological network reconstruction and analysis
☆27Updated 5 months ago
Alternatives and similar repositories for BioNERO:
Users that are interested in BioNERO are comparing it to the libraries listed below
- ☆30Updated last month
- A unified interface to spatial transcriptomics deconvolution tools☆40Updated 2 weeks ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆73Updated 10 months ago
- scWGCNA☆58Updated 2 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆29Updated 8 months ago
- Enrichment Networks for Pathway Enrichment Analysis☆43Updated last year
- cell type deconvolution for multi-condition bulk RNA-seq data☆23Updated 3 years ago
- ☆24Updated 5 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 4 months ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆37Updated last year
- 🧬 Gene analysis toolkit based on R☆56Updated 2 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- ☆27Updated 4 months ago
- ☆61Updated 8 months ago
- ☆36Updated 2 years ago
- A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data☆16Updated 5 years ago
- ☆45Updated 7 months ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆27Updated last year
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆30Updated 2 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- ☆21Updated 4 years ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆25Updated 2 months ago
- ☆47Updated 2 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated 3 months ago
- ☆26Updated 7 months ago
- Spatial transcriptomics analyses and decoding in R☆18Updated last month
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆17Updated 3 years ago
- ☆29Updated last year
- A robust and accurate cell type classifier for single cell RNA-seq data☆16Updated 2 years ago