Easy and comprehensive biological network reconstruction and analysis
☆38Sep 15, 2025Updated 11 months ago
Alternatives and similar repositories for BioNERO
Users that are interested in BioNERO are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A set of processes/pipelines for bioinformatics☆15Updated this week
- Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…☆11Jan 15, 2024Updated 2 years ago
- HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching☆36Aug 7, 2017Updated 9 years ago
- This repository contains code associated with the study "Proteomic signatures improve risk predictions for common and rare diseases" (DOI…☆20Jul 3, 2024Updated 2 years ago
- A bioinformatics toolset for multiomic analysis☆22Aug 17, 2026Updated 3 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- This R package for performing module repertoire analyses and generating fingerprint representations☆19Sep 16, 2021Updated 4 years ago
- ☆14Feb 21, 2023Updated 3 years ago
- R client for the OmniPath web service☆173Aug 3, 2026Updated last month
- Homologizer: phasing gene copies into polyploid subgenomes☆13Feb 3, 2026Updated 7 months ago
- ☆11Mar 30, 2024Updated 2 years ago
- R-package to perform metabolomics pre-processing, differential metabolite analysis, metabolite clustering and custom visualisations.☆24Updated this week
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Sep 17, 2024Updated last year
- Multiple trajectory alignment of time-series data☆13Oct 14, 2023Updated 2 years ago
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆15Aug 27, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Drawing 'dendrogram' using 'ggtree'☆13Apr 29, 2026Updated 4 months ago
- Useful functions for manipulating Multiplex Assay of Variant Effect datasets.☆11Feb 6, 2025Updated last year
- Methods to discover gene programs on single-cell data☆208Jul 21, 2026Updated last month
- ExTraMapper is a tool to find Exon and Transcript-level Mappings of a given pair of orthologous genes between two organisms using sequenc…☆12Apr 20, 2022Updated 4 years ago
- ☆23Mar 29, 2023Updated 3 years ago
- Scripts for bioinformatics data processing and analysis☆12Nov 7, 2023Updated 2 years ago
- Analysis tools for PhIP-seq experiments☆13Jan 24, 2022Updated 4 years ago
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Feb 26, 2026Updated 6 months ago
- Hapmap-v1☆12Feb 3, 2020Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- All data and notebook for my 2020 scRNA-seq analysis workshop☆18Jul 27, 2020Updated 6 years ago
- an efficient data integration method for multiple spatial transcriptomics data with non- cluster-relevant effects such as the complex batc…☆16Dec 15, 2025Updated 8 months ago
- Human Muscle Ageing Cell Atlas☆22Mar 8, 2024Updated 2 years ago
- A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets☆13Feb 7, 2025Updated last year
- Guide for the Differential Expression Analysis of RNAseq data using DESeq2☆25Nov 14, 2018Updated 7 years ago
- Scripts from the GBM cellular states paper☆21Feb 24, 2021Updated 5 years ago
- Just Annotate My Genome☆19May 21, 2026Updated 3 months ago
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Mar 29, 2025Updated last year
- Motif manipulation functions for R.☆33Jun 25, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Construct ab initio gene prediction using only BUSCO augustus models. Add in transcriptome for extra support☆23Sep 13, 2023Updated 2 years ago
- Multifastats: Multi-Fasta Sequence Stats. Free python-based program that, from a set of a set of 'fasta' sequences (as group or individua…☆11Feb 21, 2018Updated 8 years ago
- Cell type prioritization in single-cell data☆148Mar 26, 2026Updated 5 months ago
- This repository contains the source code of the R package for EvoGeneX, a software to infer the mode of evolution from the gene expressio…☆30Dec 1, 2025Updated 9 months ago
- Multi-omics multi-layered network integration and interpretation☆15Oct 15, 2024Updated last year
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆37Sep 11, 2025Updated 11 months ago
- Network analysis for multi-omics☆119May 24, 2026Updated 3 months ago