Alternatives and similar repositories for BioNERO

Users that are interested in BioNERO are comparing it to the libraries listed below

• noriakis / CBNplot
  Bayesian network plot for the enrichment analysis results
  ☆64Updated 9 months ago
• alserglab / mascarade
  Generate masks for scRNA-seq clusters on t-SNE or UMAP plots
  ☆30Updated 2 months ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 2 years ago
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated 8 months ago
• KChen-lab / METAFlux
  ☆68Updated last year
• omnideconv / spacedeconv
  A unified interface to spatial transcriptomics deconvolution tools
  ☆41Updated last week
• wenweixiong / MARVEL
  ☆49Updated 11 months ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆43Updated last month
• liulab-dfci / RIMA_pipeline
  ☆82Updated last year
• JinmiaoChenLab / ezSingleCell2
  ☆56Updated last year
• bayesrx / SpaceX
  SpaceX: Gene Co-expression Network Estimation for Spatial Transcriptomics
  ☆19Updated 2 years ago
• UPSUTER / GEMLI
  ☆32Updated 5 months ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆27Updated 3 years ago
• cnio-bu / bollito
  A single-cell RNA-seq pipeline
  ☆23Updated 2 years ago
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆84Updated last month
• RMolania / TCGA_PanCancer_UnwantedVariation
  ☆47Updated last year
• junjunlab / bulkPseudotime
  Pseudotime Analysis for Bulk Data
  ☆15Updated 11 months ago
• neurorestore / DE-analysis
  ☆39Updated 3 years ago
• GangLiLab / genekitr
  🧬 Gene analysis toolkit based on R
  ☆57Updated 6 months ago
• BradBalderson / Cytocipher
  Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…
  ☆38Updated last year
• guokai8 / scGSVA
  scGSVA: Perform GSVA for single cell RNA seq
  ☆62Updated 8 months ago
• BostonGene / Kassandra
  Bostongene cell deconvolution algorithm from RNAseq
  ☆55Updated last year
• Teichlab / cell2tcr
  Inference of TCR motifs
  ☆32Updated 3 weeks ago
• kerseviciute / aPEAR
  Enrichment Networks for Pathway Enrichment Analysis
  ☆55Updated 2 years ago
• rnabioco / djvdj
  An R package to analyze single-cell V(D)J data
  ☆28Updated last year
• McGranahanLab / TcellExTRECT
  ☆47Updated 6 months ago
• shenorrLabTRDF / bseqsc
  Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline
  ☆45Updated 2 years ago
• satijalab / Mixscale
  ☆19Updated 2 months ago
• cansysbio / ConsensusTME
  ConsensusTME Gene Sets and R Script
  ☆39Updated last year
• ETH-NEXUS / scAmpi_single_cell_RNA
  Code related to scRNA analysis using the scAmpi workflow
  ☆27Updated last month