Mykrobe-tools / mykrobeLinks
Antibiotic resistance prediction in minutes
☆112Updated last year
Alternatives and similar repositories for mykrobe
Users that are interested in mykrobe are comparing it to the libraries listed below
Sorting:
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- Simple bacterial assembly and annotation pipeline☆80Updated 2 weeks ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆71Updated 3 years ago
- Making whole bacterial genome sequencing data analysis easy☆114Updated 7 months ago
- Download files from NCBI Entrez by accession☆131Updated last year
- The ARTIC fieldbioinformatics pipeline☆127Updated last month
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆79Updated 2 years ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆60Updated last year
- a tool for inferring species tree from sequencing reads☆155Updated 2 months ago
- DDBJ Fast Annotation and Submission Tool☆83Updated 2 months ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆61Updated 6 years ago
- Bioinformatics Tools☆89Updated 2 weeks ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated 2 years ago
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆113Updated 2 years ago
- MEGAN Community Edition☆72Updated last year
- ARTIC SARS-CoV-2 workflow and reporting☆50Updated 7 months ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆75Updated 2 years ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆145Updated this week
- FunGAP: fungal Genome Annotation Pipeline☆111Updated 6 months ago
- Bioinformatics tool for Locus Visualisation☆147Updated last month
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆99Updated 2 years ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆117Updated last year
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆129Updated last year
- Long-read metagenomic analysis☆107Updated 2 years ago
- Catalog of genomic indexes freely available from public clouds☆65Updated last month
- ☆80Updated 5 years ago
- MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumin…☆46Updated 3 months ago
- A toolbox for pangenome analysis and threshold evaluation.☆101Updated 3 years ago
- CLI tool to annotate genes with KOfam☆85Updated 2 years ago