Antibiotic resistance prediction in minutes
☆118Mar 27, 2026Updated 3 months ago
Alternatives and similar repositories for mykrobe
Users that are interested in mykrobe are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data☆135Apr 16, 2026Updated 2 months ago
- CRyPTIC data processing pipelines☆35Jul 18, 2024Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆344Sep 11, 2025Updated 9 months ago
- Variant call adjudication☆17Jun 13, 2024Updated 2 years ago
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆371Jun 29, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Assemble bacterial isolate genomes from Nanopore reads☆134Jan 22, 2025Updated last year
- Antibiotic resistance predictions in minutes on a laptop☆50Mar 7, 2019Updated 7 years ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆128Oct 30, 2023Updated 2 years ago
- Simulate mutations in genomes☆15Jun 15, 2020Updated 6 years ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆100Jun 8, 2026Updated last month
- MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumin…☆48Sep 8, 2025Updated 10 months ago
- Standard database for the TBProfiler tool☆30Jun 23, 2026Updated 2 weeks ago
- A toolbox for pangenome analysis and threshold evaluation.☆101Jul 8, 2022Updated 4 years ago
- Antimicrobial Resistance Identification By Assembly☆186Oct 12, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆26Apr 10, 2026Updated 2 months ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆14Jun 5, 2026Updated last month
- hybrid assembly pipeline for bacterial genomes☆645Jul 25, 2024Updated last year
- ☆142Jun 1, 2026Updated last month
- Mass screening of contigs for antimicrobial and virulence genes☆500Apr 3, 2026Updated 3 months ago
- Rapid determination of appropriate reference genomes.☆102Jan 22, 2025Updated last year
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆424May 20, 2026Updated last month
- Rapid haploid variant calling and core genome alignment☆588Dec 12, 2025Updated 6 months ago
- Read contamination removal☆25Jan 24, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆32Aug 28, 2025Updated 10 months ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆155Oct 2, 2025Updated 9 months ago
- A flexible pipeline for complete analysis of bacterial genomes☆519May 21, 2026Updated last month
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆661May 15, 2026Updated last month
- ☆14Jun 30, 2021Updated 5 years ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆15Aug 26, 2024Updated last year
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Mar 8, 2024Updated 2 years ago
- "Reads to report" for public health and clinical microbiology☆144Dec 9, 2025Updated 6 months ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆155Dec 31, 2025Updated 6 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A snakemake workflow for WGS-based tuberculosis transmission analysis☆20Dec 3, 2024Updated last year
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆260Jun 11, 2026Updated 3 weeks ago
- Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure☆180Apr 22, 2026Updated 2 months ago
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆107Jan 22, 2026Updated 5 months ago
- Mycobacterium tuberculosis next generation sequence analysis☆24Oct 11, 2019Updated 6 years ago
- Pan-genome inference and genotyping with long noisy or short accurate reads☆118Dec 13, 2024Updated last year
- Chromosome-level scaffolding using multiple references☆169Sep 8, 2024Updated last year