Alternatives and similar repositories for mykrobe

Users that are interested in mykrobe are comparing it to the libraries listed below

• nigyta / dfast_core
  DDBJ Fast Annotation and Submission Tool
  ☆81Updated 3 months ago
• oschwengers / asap
  A scalable bacterial genome assembly, annotation and analysis pipeline
  ☆74Updated last year
• nf-core / bacass
  Simple bacterial assembly and annotation pipeline
  ☆76Updated last week
• transcript / samsa2
  SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…
  ☆55Updated last year
• bhattlab / lathe
  A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing
  ☆70Updated 3 years ago
• bhattlab / kraken2_classification
  Snakemake workflow for metagenomic classification with Kraken2
  ☆65Updated 2 years ago
• ngs-fzb / MTBseq_source
  MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumin…
  ☆45Updated last year
• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆124Updated last year
• jameshadfield / phandango
  an interactive viewer for populations of bacterial genomes linked by a phylogeny
  ☆126Updated last year
• nmquijada / tormes
  Making whole bacterial genome sequencing data analysis easy
  ☆109Updated 3 months ago
• kblin / ncbi-acc-download
  Download files from NCBI Entrez by accession
  ☆127Updated 11 months ago
• CompSynBioLab-KoreaUniv / FunGAP
  FunGAP: fungal Genome Annotation Pipeline
  ☆111Updated 2 months ago
• AstrobioMike / bit
  Bioinformatics Tools
  ☆89Updated last week
• takaram / kofam_scan
  CLI tool to annotate genes with KOfam
  ☆85Updated 2 years ago
• EBI-Metagenomics / emg-viral-pipeline
  VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
  ☆138Updated last week
• robotoD / GenoVi
  GenoVi, an automated customizable circular genome visualizer for bacteria and archaea
  ☆96Updated 2 years ago
• bjtully / BioData
  All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")
  ☆77Updated 2 years ago
• aleimba / bac-genomics-scripts
  Collection of scripts for bacterial genomics
  ☆47Updated 5 years ago
• artic-network / fieldbioinformatics
  The ARTIC field bioinformatics pipeline
  ☆125Updated 3 weeks ago
• BenLangmead / aws-indexes
  Catalog of genomic indexes freely available from public clouds
  ☆61Updated last week
• fanglab / nanodisco
  nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…
  ☆70Updated 3 years ago
• happykhan / BRIG
  BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…
  ☆35Updated 6 years ago
• SionBayliss / PIRATE
  A toolbox for pangenome analysis and threshold evaluation.
  ☆100Updated 3 years ago
• ablab / viralVerify
  viralVerify: viral contig verification tool
  ☆71Updated 3 years ago
• mjsull / Easyfig
  Development version of Easyfig
  ☆99Updated last year
• art-egorov / lovis4u
  Bioinformatics tool for Locus Visualisation
  ☆112Updated 2 months ago
• aresti / primalscheme
  a tool for designing primer panels for multiplex PCR.
  ☆105Updated last year
• jodyphelan / tbdb
  Standard database for the TBProfiler tool
  ☆30Updated this week
• rrwick / Metagenomics-Index-Correction
  ☆83Updated last year
• patrickwest / EukRep
  Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets
  ☆73Updated last year