will-rowe / groot
A resistome profiler for Graphing Resistance Out Of meTagenomes
☆65Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for groot
- Split Kmer Analysis☆63Updated 2 years ago
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆45Updated 2 years ago
- A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads☆69Updated 3 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 3 years ago
- De novo Extraction of Strains from MetAgeNomes☆69Updated 4 years ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 2 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆42Updated 4 years ago
- Visualize whole genome alignments as linear maps☆70Updated last month
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆41Updated last year
- Recombination-free trees☆56Updated last year
- tools for assessing the accuracy of genome assemblies☆34Updated 6 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆52Updated last year
- scripts for estimating bacteria replication rates based on population genome copy number variation☆68Updated 4 years ago
- ☆78Updated last year
- Efficient and comprehensive metadata acquisition from the NCBI databases (includes SRA).☆48Updated 2 years ago
- ☆51Updated 3 years ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆56Updated 5 years ago
- Estimate metagenomic coverage and sequence diversity☆46Updated 3 months ago
- Precise host read removal☆78Updated 2 weeks ago
- A tool for removing redundant genomes from a set of assemblies☆68Updated last year
- de novo virus assembler of Illumina paired reads☆54Updated 3 years ago
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆83Updated 2 weeks ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- Automated strain separation of low-complexity metagenomes☆50Updated 3 years ago
- Pan-Genomic Matching Statistics☆48Updated 7 months ago
- Identify phage regions in bacterial genomes for masking purposes☆30Updated 5 years ago
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆92Updated this week
- IS mapping software☆51Updated 2 years ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆71Updated 11 months ago
- A versatile toolkit for k-mers with taxonomic information☆75Updated 3 months ago