Single Cell Classification using RNA-seq data and Supervised Learning Algorithms
☆13May 7, 2016Updated 10 years ago
Alternatives and similar repositories for CellClassificationMachineLearning
Users that are interested in CellClassificationMachineLearning are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Oct 20, 2020Updated 6 years ago
- Code and Data Availability for Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversi…☆10Apr 16, 2020Updated 6 years ago
- Breast Cancer Single Cell Atlas☆12Mar 31, 2022Updated 4 years ago
- SCISSORS builds upon the Louvain graph-based clustering in Seurat by optimizing parameter selection when reclustering cell groups, with a…☆17May 5, 2026Updated 5 months ago
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data.☆44Mar 3, 2017Updated 9 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- This is the official repository for the Human Cell Atlas Heart project.☆33Jul 28, 2020Updated 6 years ago
- Inference of switch-like differential expression along single-cell trajectories☆23Oct 24, 2017Updated 9 years ago
- Single-cell RNA-seq clustering and annotation☆13Oct 26, 2020Updated 6 years ago
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Dec 20, 2018Updated 7 years ago
- Post hoc cell type classification of single-cell RNA-sequencing data.☆11Oct 5, 2021Updated 5 years ago
- Active contour model, also called snakes, is a framework in computer vision for delineating an object outline from a possibly noisy 2D im…☆11Feb 9, 2018Updated 8 years ago
- Here I show how to use Deep Learning for biological and biomedical Data Integration.☆11Sep 17, 2020Updated 6 years ago
- Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)☆26Feb 1, 2020Updated 6 years ago
- Remove the bed from CT image based on ITK.☆11Jul 12, 2019Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Shell bootloader for data science.☆11Updated this week
- Codes for our paper "Single-Cell RNA-Seq Reveals Dynamic Early Embryonic-like Programs during Chemical Reprogramming" published by Cell S…☆11Sep 5, 2020Updated 6 years ago
- Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network☆113Jul 6, 2023Updated 3 years ago
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 3 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Jan 14, 2024Updated 2 years ago
- Symphony algorithm for inference of cell type specific gene regulatory networks from scRNA-seq and ATAC-seq☆11Nov 9, 2021Updated 4 years ago
- ☆39Apr 21, 2026Updated 6 months ago
- Notes and code from a network biology study group at UMD.☆10Apr 11, 2015Updated 11 years ago
- Extract protein embeddings the easy way.☆10Oct 6, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Create PyTorch Datasets from AnnData☆21Jan 6, 2026Updated 9 months ago
- S-LDSC scripts for use on MR server.☆10Sep 23, 2021Updated 5 years ago
- A repository to host extended examples and tutorials.☆11Dec 17, 2025Updated 10 months ago
- ChEMBL Database used to create Lipinski Descriptors (ADME Pharmokinetic Profile) to use in a Random Forest Regression Model☆16Nov 8, 2020Updated 5 years ago
- Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data☆30Mar 2, 2020Updated 6 years ago
- R package for the inference of cell fate bias from single-cell RNA-seq data.☆22Jun 14, 2022Updated 4 years ago
- The fundamentals of image analysis using NumPy, SciPy, and Matplotlib☆16Aug 20, 2020Updated 6 years ago
- Data preprocessing for IUPUI-CSRC Pedestrian Situated Intent (PSI) benchmark dataset.☆11Oct 5, 2023Updated 3 years ago
- Geo Bio MCP - A Model Context Protocol (MCP) server for accessing GEO (Gene Expression Omnibus) data through NCBI E-Utils API☆18Apr 20, 2026Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆15Apr 20, 2021Updated 5 years ago
- ☆19Mar 6, 2019Updated 7 years ago
- Squanchy is a brand new, easy to learn, general purpose, multi-paradigm, compiled programming language. The language is written from scra…☆15Dec 7, 2019Updated 6 years ago
- Benchmarking for gene expression from single cell latent representations☆22Updated this week
- SCATE: Single-cell ATAC-seq Signal Extraction and Enhancement☆10Oct 15, 2020Updated 6 years ago
- Lung cancer 10X analysis☆11Dec 30, 2020Updated 5 years ago
- A web app to view and analyze single cell RNAseq data with Seurat☆10Mar 25, 2023Updated 3 years ago