LuChenLab / inferCC
Lung cancer 10X analysis
☆11Updated 4 years ago
Alternatives and similar repositories for inferCC
Users that are interested in inferCC are comparing it to the libraries listed below
Sorting:
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- analysis script for GBM single cell RNA seq data☆18Updated 3 years ago
- Deconvolution of spatial transcriptomics at single-cell resolution☆17Updated 7 months ago
- Ordering gene-expression and functional events in single-cell experiments☆22Updated last year
- code for data processing and visualisation associated with the stromal subclasses manuscript☆11Updated 4 years ago
- a simple R data package for curated cancer pathway-specific gene lists☆10Updated 5 years ago
- ☆16Updated last year
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆12Updated 2 years ago
- HCC single cell analysis for Alvarez, Benhammou et al.☆16Updated 3 years ago
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Updated 2 months ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆25Updated 2 months ago
- Calculate NEPC risk score from bulk transcriptome data or single-cell RNA-seq for prostate cancer☆13Updated 5 months ago
- ☆17Updated last year
- ☆22Updated 2 years ago
- ☆9Updated 10 months ago
- ☆16Updated 4 years ago
- ☆9Updated 10 months ago
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆30Updated 2 years ago
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆13Updated last year
- ☆12Updated last year
- ☆20Updated last year
- Spatial transcriptomics of heart tissue☆21Updated 2 years ago
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆22Updated last year
- ☆17Updated last year
- The codes and files for the study of subsolid nodules (SSN).☆14Updated 4 years ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆11Updated 7 months ago
- ☆13Updated last year
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆22Updated 2 years ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆15Updated 3 years ago
- ☆13Updated 7 years ago