Alternatives and similar repositories for epiregulon

Users that are interested in epiregulon are comparing it to the libraries listed below

• klarman-cell-observatory / scSVA
  Single-cell Scalable Visualization and Analytics
  ☆26Updated 6 years ago
• lkmklsmn / insct
  scRNAseq integration with triplet neural networks
  ☆41Updated 2 years ago
• jyyulab / SJARACNe
  Scalable Tool for Gene Network Reverse Engineering
  ☆24Updated last year
• combiz / scFlow
  Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.
  ☆56Updated last year
• raphael-group / hierarchical-hotnet
  Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.
  ☆38Updated 5 years ago
• csoneson / rna_velocity_quant
  Evaluation of the effect of quantification choices on RNA velocity estimates
  ☆27Updated 3 years ago
• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆40Updated 6 years ago
• brianhie / trajectorama
  Multi-study integration of cellular trajectories
  ☆19Updated 5 years ago
• HelenaLC / muscat-comparison
  ☆12Updated last year
• Core-Bioinformatics / ClustAssess
  Tools for assessing clustering robustness
  ☆25Updated this week
• GreenleafLab / motifmatchr
  Fast motif matching in R
  ☆46Updated last year
• shenorrLabTRDF / bseqsc
  Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline
  ☆45Updated 2 years ago
• lcmmichielsen / scHPL
  ☆35Updated 4 months ago
• satijalab / scChromHMM
  🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…
  ☆28Updated 3 years ago
• Winnie09 / imputationBenchmark
  benchmark for single-cell RNA-seq imputation methods
  ☆26Updated last year
• Tchanders / network_inference_tutorials
  ☆31Updated 6 years ago
• icbi-lab / immune_deconvolution_benchmark
  Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…
  ☆43Updated 5 years ago
• wwylab / DeMixT
  ☆36Updated last year
• shenorrLabTRDF / cellAlign
  ☆41Updated 4 years ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆43Updated last month
• theislab / scanpy-in-R
  A guide to using the Python scRNA-seq analysis package Scanpy from R
  ☆15Updated 5 years ago
• cansysbio / ConsensusTME
  ConsensusTME Gene Sets and R Script
  ☆39Updated last year
• linnarsson-lab / cytograph
  Algorithms for single-cell analysis
  ☆29Updated 4 years ago
• nghiavtr / BPSC
  Beta-Poisson model for single-cell RNA-seq data analyses
  ☆16Updated 6 years ago
• ctlab / LinSeed
  Linseed: LINear Subspace identification for gene Expresion Deconvolution
  ☆30Updated 2 months ago
• showteeth / GEfetch2R
  GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools
  ☆36Updated 3 months ago
• antigenomics / vdjmatch
  ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities
  ☆38Updated 6 years ago
• pachterlab / GFCP_2022
  RNA velocity validation
  ☆22Updated 3 years ago
• YosefLab / scone
  ☆55Updated 5 months ago
• broadinstitute / single_cell_classification
  Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles
  ☆29Updated 5 years ago