inference of transcription factor activity at the single cell level
☆24Dec 16, 2025Updated 2 months ago
Alternatives and similar repositories for epiregulon
Users that are interested in epiregulon are comparing it to the libraries listed below
Sorting:
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Dec 8, 2021Updated 4 years ago
- Data visualization with R☆12Dec 12, 2020Updated 5 years ago
- R package for integrating and comparing multiple single cell genomic datasets☆11Dec 27, 2020Updated 5 years ago
- ☆14Dec 21, 2022Updated 3 years ago
- Standalone shiny server container for viewing CellChat object☆13Feb 18, 2021Updated 5 years ago
- Project bulk/single-cell RNA-seq data to given LSI space☆11Jan 17, 2022Updated 4 years ago
- An R Interface to Large Language Models☆27Sep 21, 2025Updated 5 months ago
- ☆14Jun 4, 2023Updated 2 years ago
- Codes for our paper "Single-Cell RNA-Seq Reveals Dynamic Early Embryonic-like Programs during Chemical Reprogramming" published by Cell S…☆11Sep 5, 2020Updated 5 years ago
- Computational identification of targets for CAR-T cell therapy in AML☆21Dec 25, 2022Updated 3 years ago
- ChIP-Atlas: Browse and analyze all public ChIP/DNase-seq data on your browser☆81Updated this week
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆18May 25, 2021Updated 4 years ago
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data.☆42Mar 3, 2017Updated 9 years ago
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆22Oct 27, 2021Updated 4 years ago
- Pipelines for NGS data preprocessing by the Bock lab and friends☆22Aug 29, 2022Updated 3 years ago
- RNA-Sequencing data differential expression analysis pipeline. Performs: genome coverage (via bedtools and HTSeq), generates Circos code …☆56Nov 27, 2012Updated 13 years ago
- An interactive Shiny App for UpSet plots, Venn diagrams and Pairwise heatmaps☆21Apr 3, 2018Updated 7 years ago
- Code to support: "pcaReduce: hierarchical clustering of single cell transcriptional profiles"☆20Feb 24, 2024Updated 2 years ago
- NRPSpredictor2 is a program to predict the specificity of bacterial and fungal adenylation domains.☆11Oct 7, 2019Updated 6 years ago
- Analysis pipeline for the adolescent mouse nervous system project☆24Jun 28, 2018Updated 7 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Jul 31, 2023Updated 2 years ago
- A 3D genome data processing tutorial for ISMB/ECCB 2017☆52Jul 21, 2017Updated 8 years ago
- This repository contains the source code of the R package for EvoGeneX, a software to infer the mode of evolution from the gene expressio…☆28Dec 1, 2025Updated 3 months ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆22Sep 16, 2019Updated 6 years ago
- Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data☆28Mar 2, 2020Updated 6 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆97Nov 24, 2020Updated 5 years ago
- Normalization for single cell RNA-seq data☆51Jun 11, 2025Updated 8 months ago
- A GWAS fine-mapping pipeline used in CAUSALdb☆27May 1, 2022Updated 3 years ago
- NastyBugs: a simple method for extracting antimicrobial resistance information from metagenomes☆23Dec 6, 2018Updated 7 years ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Nov 10, 2021Updated 4 years ago
- Viscello for Visualization of Single Cell Data☆25Oct 5, 2024Updated last year
- ChIA-PIPE: A fully automated pipeline for comprehensive ChIA-PET data analysis and visualization☆29Aug 13, 2021Updated 4 years ago
- Generate cellular maps of differentiation manifolds with complex topologies.☆27Jun 26, 2018Updated 7 years ago
- An R-based interface for loom files☆68Jul 9, 2020Updated 5 years ago
- Algorithms for single-cell analysis☆29Jul 19, 2021Updated 4 years ago
- Single cell interactive plotting tools☆24Jun 12, 2020Updated 5 years ago
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆55Nov 1, 2025Updated 4 months ago
- A python package for chromVAR☆33May 1, 2023Updated 2 years ago
- A high throughput automated drug discovery pipeline.☆29Mar 16, 2018Updated 7 years ago