xiaosaiyao / epiregulon
inference of transcription factor activity at the single cell level
☆12Updated last month
Alternatives and similar repositories for epiregulon:
Users that are interested in epiregulon are comparing it to the libraries listed below
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆26Updated 3 years ago
- Bead-based single-cell atac processing☆31Updated 3 years ago
- post-clustering differential expression test☆35Updated 5 years ago
- R package for benchmarking single cell analysis methods☆30Updated last year
- ☆12Updated 9 months ago
- Clone of the Bioconductor repository for the basilisk package.☆27Updated last week
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 6 years ago
- Calculation of distance metrics for matrices☆25Updated 5 years ago
- ☆20Updated last year
- Linseed: LINear Subspace identification for gene Expresion Deconvolution☆29Updated 5 years ago
- A post-clustering differential expression (DE) method robust to false-positive inflation caused by double dipping☆24Updated 2 months ago
- Single Cell multimodal data scripts for downloading datasets☆17Updated 3 months ago
- R/Bioconductor package for working with 10x scATACseq data☆38Updated last year
- Single-cell Scalable Visualization and Analytics☆25Updated 5 years ago
- ☆62Updated 3 months ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated 4 months ago
- Tools for assessing clustering robustness☆23Updated this week
- Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data☆13Updated 3 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- ☆38Updated 4 years ago
- Comparison of dimensionality reduction methods☆30Updated 4 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- Mean Alterations Using Discrete Expression☆14Updated 10 months ago
- ☆19Updated 7 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 2 years ago
- Analysis steps to calculate RNA Velocity in Bulk RNA-Seq samples. Step by Step Guide.☆14Updated 5 years ago
- Inferring gene co-expression networks from single cell gene expression data☆24Updated 2 years ago
- Repository for the Epigenomics Tutorial hold at ISMB 2017 in Prague☆14Updated 4 years ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆44Updated last year
- R package for Flexible dot plots☆29Updated 2 years ago