inference of transcription factor activity at the single cell level
☆29Jul 2, 2026Updated 2 months ago
Alternatives and similar repositories for epiregulon
Users that are interested in epiregulon are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a deep generative model for single-cell survival analysis☆26Dec 2, 2025Updated 9 months ago
- ☆15Jun 4, 2023Updated 3 years ago
- ☆10Nov 5, 2023Updated 2 years ago
- Multiome GRN inference.☆142Apr 10, 2026Updated 4 months ago
- Python Toolkit for Transcription Factor Activity Inference and Clustering of scRNA-seq Data☆36Dec 15, 2025Updated 8 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Code used for mouse single cell RNAseq testis atlas☆12Nov 28, 2020Updated 5 years ago
- ☆13Jun 15, 2024Updated 2 years ago
- R package for integrating and comparing multiple single cell genomic datasets☆12Dec 27, 2020Updated 5 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Dec 8, 2021Updated 4 years ago
- The codes and files for the study of subsolid nodules (SSN).☆15Oct 13, 2020Updated 5 years ago
- GenePert: Leveraging GenePT Embeddings for Gene Perturbation Prediction☆21Oct 29, 2024Updated last year
- scSurvival is a new tool for survival analysis from single cell cohort dataset.☆28Apr 27, 2026Updated 4 months ago
- Data visualization with R☆12Dec 12, 2020Updated 5 years ago
- Standalone shiny server container for viewing CellChat object☆14Feb 18, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- visualization tools for exon/junction coverage☆12Dec 30, 2019Updated 6 years ago
- Bayesian Sparse Additive Perturbation Regression, code and simulations☆16Apr 29, 2025Updated last year
- Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing☆21Nov 18, 2025Updated 9 months ago
- A human universal senescence index to evaluate celluar senescence☆44Sep 11, 2025Updated 11 months ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Nov 9, 2021Updated 4 years ago
- SLICER algorithm for inferring cell trajectories. See details in Welch et al., Genome Biology 2016: http://genomebiology.biomedcentral.co…☆16Oct 17, 2017Updated 8 years ago
- ☆16Sep 8, 2024Updated last year
- Code to support: "pcaReduce: hierarchical clustering of single cell transcriptional profiles"☆21Feb 24, 2024Updated 2 years ago
- Webpage of the "Introduction to RNA-Seq: From quality control to pathway analysis - streamed" SIB course.☆16Jul 14, 2026Updated last month
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Generate Novel Insights from Gene Correlation Data☆14Jun 27, 2022Updated 4 years ago
- Functional Inference of Gene Regulation☆55Jul 5, 2024Updated 2 years ago
- Introduction to Python3☆11Oct 26, 2020Updated 5 years ago
- scITDG is a tool for identifying time-dependent genes in single-cell sequencing data☆17Nov 24, 2025Updated 9 months ago
- Differential Expression with Capture Efficiency adjustmeNT☆15Jan 3, 2023Updated 3 years ago
- ☆24Nov 3, 2025Updated 10 months ago
- Project bulk/single-cell RNA-seq data to given LSI space☆12Jan 17, 2022Updated 4 years ago
- A unified framework for identifying multicellular niches and niche-regulated cell states from spatial transcriptomics data.☆17Aug 3, 2026Updated last month
- Open4Gene, A Hurdle Model-based Method for Peak-to-Gene Linkage Analysis☆17Mar 17, 2026Updated 5 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Fully indexable dictionaries - access/rank/select operations☆13Sep 10, 2018Updated 7 years ago
- Shiny app for visualization, exploration of mouse brain single cell gene expression☆12Oct 31, 2018Updated 7 years ago
- A package for analyzing spatial transcriptomics data with Gaussian smoothing, spatial gene correlation network clustering, gene module vi…☆23Apr 3, 2026Updated 5 months ago
- ☆17Jun 17, 2021Updated 5 years ago
- iSEE repository for the Shiny contest☆13Mar 15, 2020Updated 6 years ago
- FM-index for full-text search☆20Nov 20, 2021Updated 4 years ago
- Fast motif matching in R☆49Jan 24, 2024Updated 2 years ago