yanailab / CEL-Seq-pipelineLinks
☆33Updated 7 years ago
Alternatives and similar repositories for CEL-Seq-pipeline
Users that are interested in CEL-Seq-pipeline are comparing it to the libraries listed below
Sorting:
- A toolkit for QC and visualization of ATAC-seq results.☆72Updated 11 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- Pipeline for processing inDrops sequencing data☆76Updated 7 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 7 years ago
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆32Updated 6 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆80Updated 9 months ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- RNA-seq Quantification of Alternative Polyadenylation☆50Updated 4 months ago
- Tutorial for AMSI BioInfoSummer 2018☆30Updated 7 years ago
- Code and figures accompanying the paper, "Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neu…☆20Updated 8 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆45Updated 2 years ago
- R package for robust clustering of single cell RNA sequencing data☆40Updated 2 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 2 months ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- Tools for processing UMI RNA-tag data☆131Updated 2 years ago
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated 2 years ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆48Updated 9 months ago
- Analysis of single cell RNA-Seq data from Veres et al.☆12Updated 6 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Updated 3 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- Single-CELL rna-seq analysis software☆39Updated 8 years ago
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆52Updated 7 years ago
- An R package for inferring the subclonal architecture of tumors☆122Updated 2 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago
- ☆34Updated 6 years ago
- Mouse cell atlas☆61Updated 5 years ago
- Robust Allele Specific Quantification and quality controL☆40Updated 3 years ago