yanailab / CEL-Seq-pipeline
☆33Updated 6 years ago
Alternatives and similar repositories for CEL-Seq-pipeline:
Users that are interested in CEL-Seq-pipeline are comparing it to the libraries listed below
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆31Updated 5 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆54Updated this week
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆35Updated 6 years ago
- ☆33Updated 5 years ago
- R package for robust clustering of single cell RNA sequencing data☆38Updated last year
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆73Updated 2 months ago
- Tutorial for AMSI BioInfoSummer 2018☆29Updated 6 years ago
- R code for single-cell analysis of intestinal epithelial cells☆21Updated 7 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- ATAC-seq lab for BIOINF545☆25Updated 11 months ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆47Updated last month
- A toolkit for QC and visualization of ATAC-seq results.☆67Updated last month
- ☆17Updated 6 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated 7 months ago
- ☆53Updated 4 months ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆76Updated 2 years ago
- bradner lab computation pipeline scripts☆54Updated 3 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆32Updated 6 years ago
- Scripts for processing single liver cells RNA-Seq 10X Genomics Data☆23Updated 6 years ago
- scRNA-seq cell type identification☆44Updated 5 years ago
- Analysis of single cell RNA-Seq data from Veres et al.☆12Updated 5 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 4 years ago
- Integrative analysis pipeline for pooled CRISPR functional genetic screens☆29Updated last year
- ATAC-seq Quality Control☆22Updated last month
- ☆22Updated 6 years ago