yanailab / CEL-Seq-pipeline

Related projects ⓘ

Alternatives and complementary repositories for CEL-Seq-pipeline

• ratschlab / pancanatlas_code_public
  Public repository containing research code for the TCGA PanCanAtlas Splicing project
  ☆41Updated 3 years ago
• databio / pepatac
  A modular, containerized pipeline for ATAC-seq data processing
  ☆54Updated 3 weeks ago
• bowmanr / scDNA_myeloid
  Processing scripts for single cell DNA sequencing on the Tapestri platform
  ☆24Updated last year
• huangyh09 / brie
  BRIE: Bayesian Regression for Isoform Estimate in Single Cells
  ☆41Updated 4 months ago
• lanagarmire / SSrGE
  ☆33Updated 5 years ago
• simonvh / bioinfosummer
  Tutorial for AMSI BioInfoSummer 2018
  ☆29Updated 5 years ago
• wbaopaul / scATAC-pro
  A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
  ☆72Updated 2 months ago
• dbrg77 / plate_scATAC-seq
  A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method
  ☆43Updated 3 years ago
• natsuhiko / rasqual
  Robust Allele Specific Quantification and quality controL
  ☆37Updated 2 years ago
• wzthu / esATAC
  Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis
  ☆23Updated 2 years ago
• broadinstitute / 2019_scWorkshop
  Repo for Physalia course Analysis of Single Cell RNA-Seq data
  ☆31Updated 5 years ago
• pachterlab / kallisto-transcriptome-indices
  Reference transcriptome indices build from kallisto for popular organisms
  ☆41Updated 11 months ago
• jon-xu / scSplit
  Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…
  ☆41Updated last year
• adamh-broad / single_cell_intestine
  R code for single-cell analysis of intestinal epithelial cells
  ☆21Updated 6 years ago
• single-cell-genetics / cellSNP
  Pileup biallelic SNPs from single-cell and bulk RNA-seq data
  ☆75Updated 2 years ago
• GIS-SP-Group / RCA
  R package for robust clustering of single cell RNA sequencing data
  ☆38Updated last year
• r3fang / snATAC
  <<------ Use SnapATAC!!
  ☆25Updated 5 years ago
• kundajelab / ataqc
  ☆17Updated 5 years ago
• ucdavis-bioinformatics-training / 2017_2018-single-cell-RNA-sequencing-Workshop-UCD_UCB_UCSF
  2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF
  ☆35Updated 6 years ago
• elimereu / matchSCore2
  ☆53Updated 3 years ago
• ggjlab / scMCA
  Mouse cell atlas
  ☆59Updated 4 years ago
• Teichlab / innate_evo
  ☆12Updated 6 years ago
• YosefLab / ImpulseDE2
  ☆37Updated 2 years ago
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆69Updated 3 years ago
• MarioniLab / EmbryoTimecourse2018
  Data and analysis scripts for our Embryo Timecourse paper.
  ☆65Updated 4 years ago
• snystrom / memes
  An R interface to the MEME Suite
  ☆45Updated last month
• caleblareau / gchromVAR
  Cell type specific enrichments using finemapped variants and quantitative epigenetic data
  ☆42Updated last year
• statgen / popscle
  A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…
  ☆43Updated 3 years ago
• chung-lab / SCAFE
  Single Cell Analysis of Five'Ends
  ☆44Updated 7 months ago
• ParkerLab / bioinf545
  ATAC-seq lab for BIOINF545
  ☆25Updated 7 months ago
• databio / awesome-atac-analysis
  Links to ATAC-seq analysis tools
  ☆50Updated 3 years ago