akoch8 / mexpressLinks
MEXPRESS is a data visualization tool designed for the visualization of TCGA expression, DNA methylation and clinical data.
☆13Updated 4 years ago
Alternatives and similar repositories for mexpress
Users that are interested in mexpress are comparing it to the libraries listed below
Sorting:
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- ☆29Updated 6 years ago
- Fast motif matching in R☆47Updated last year
- ☆40Updated 7 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 4 years ago
- TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages☆45Updated last year
- This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".☆18Updated 5 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆32Updated 3 years ago
- R package☆22Updated last year
- 10x single cell RNA-seq data from the developing mouse retina☆16Updated 4 years ago
- Identification of differentially methylated genes in biomedical data☆15Updated 6 years ago
- Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.☆25Updated 3 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆74Updated 2 years ago
- GSCALite: Gene set for cancer analysis☆23Updated 3 years ago
- Transcriptomic tools to classify bladder tumours according to six published molecular classifications : Baylor, UNC, MDA, Lund, CIT-Curie…☆27Updated 2 years ago
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆23Updated 4 years ago
- A light weight shiny based web app to access TCGA data☆14Updated 10 years ago
- Tumor Immune Single-cell Hub☆21Updated 4 years ago
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆41Updated 3 years ago
- Analysis notebooks and data for AML hierarchies paper☆16Updated last year
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data. This is a novel R package of the RaceID3 and S…☆43Updated 7 months ago
- XEnograft Visualization & Analysis☆11Updated 3 months ago
- 🏺 Exploring novel tumor epitope identification☆34Updated 4 years ago
- R Data: Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations☆29Updated 5 years ago
- Processed rna-seq data, copy number variation data, and methylation data on GEO and TCGA☆26Updated 2 years ago
- Contribution of systemic and somatic factors to clinical response and resistance in urothelial cancer: an exploratory multi-omic analysis☆22Updated 7 years ago
- Immune evasion before tumor invasion in early squamous lung cell carcinogenesis☆16Updated 3 years ago
- ☆16Updated 2 years ago
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 5 years ago