ChengLiLab / CSC2018Links
Codes for our paper "Single-Cell RNA-Seq Reveals Dynamic Early Embryonic-like Programs during Chemical Reprogramming" published by Cell Stem Cell at year 2018
☆11Updated 5 years ago
Alternatives and similar repositories for CSC2018
Users that are interested in CSC2018 are comparing it to the libraries listed below
Sorting:
- single cell and bulk RNASeq analysis scripts☆14Updated 3 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 2 years ago
- ☆18Updated 5 years ago
- ☆24Updated 4 years ago
- ☆12Updated 4 years ago
- STAR, cufflinks, cluster, DESeq2, GO analysis☆14Updated 5 years ago
- Publication Page for the Noack et al. 2021 Nature Neuroscience paper☆10Updated 3 years ago
- A Shiny tool to define the cell-type of action by integrating single cell expression data with GWAS☆12Updated 7 years ago
- bioinformatics R test code☆14Updated 2 months ago
- ☆16Updated 2 years ago
- Analysis pipeline for our circSC manuscript☆14Updated 3 years ago
- ☆26Updated 2 years ago
- In this study, we perform systematic comparative analysis of seven widely-used SNV-calling methods, including SAMtools, the GATK Best Pra…☆16Updated 6 years ago
- TWAS-pipeline☆24Updated 4 years ago
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆26Updated 3 years ago
- Scripts for plotting figures and running analysis throughout the manuscript☆11Updated 4 years ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆12Updated 6 years ago
- PredictDB Pipeline for GTEx v7 data☆16Updated 3 years ago
- Readme☆10Updated 5 years ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆27Updated 2 years ago
- ☆29Updated 4 years ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- ☆10Updated 6 months ago
- ☆18Updated 2 years ago
- ChromSCape☆14Updated 3 months ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- An R package for time course sequencing data analysis☆20Updated 2 years ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 7 months ago