ChengLiLab / CSC2018Links
Codes for our paper "Single-Cell RNA-Seq Reveals Dynamic Early Embryonic-like Programs during Chemical Reprogramming" published by Cell Stem Cell at year 2018
☆11Updated 5 years ago
Alternatives and similar repositories for CSC2018
Users that are interested in CSC2018 are comparing it to the libraries listed below
Sorting:
- single cell and bulk RNASeq analysis scripts☆12Updated 3 years ago
- ☆12Updated 4 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- ☆18Updated 4 years ago
- STAR, cufflinks, cluster, DESeq2, GO analysis☆14Updated 5 years ago
- bioinformatics R test code☆14Updated 2 weeks ago
- Analysis pipeline for our circSC manuscript☆14Updated 3 years ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆22Updated 6 years ago
- Data visualization with R☆12Updated 4 years ago
- ☆16Updated 2 years ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 5 years ago
- Readme☆10Updated 5 years ago
- ☆25Updated 2 years ago
- ChromSCape☆14Updated last month
- Publication Page for the Noack et al. 2021 Nature Neuroscience paper☆10Updated 3 years ago
- ☆10Updated 4 months ago
- ☆23Updated 4 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 5 months ago
- Scripts for plotting figures and running analysis throughout the manuscript☆11Updated 3 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- ReMapEnrich is a R-software package to identify significantly enriched regions from ReMap catalogues or user defined catalogues. ReMapEnr…☆15Updated 3 years ago
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆15Updated 5 years ago
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆11Updated 5 years ago
- shared scripts in Lu Lab @ Tsinghua University☆13Updated 6 years ago
- In this study, we perform systematic comparative analysis of seven widely-used SNV-calling methods, including SAMtools, the GATK Best Pra…☆16Updated 5 years ago
- RAPToR (Real Age Prediction from Transcriptome staging on Reference) is a tool to accurately predict individual samples' developmental ag…☆20Updated 2 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Updated 4 years ago
- ☆27Updated 4 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago