Alternatives and similar repositories for CSC2018

Users that are interested in CSC2018 are comparing it to the libraries listed below

• ManchesterBioinference / IntegratingATAC-RNA-HiC
  scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper
  ☆24Updated 2 years ago
• YutingPKU / Bulk_RNA-Seq_Workflow_Snakemake
  STAR, cufflinks, cluster, DESeq2, GO analysis
  ☆14Updated 5 years ago
• cemalley / scRNASeq-bulkRNASeq
  single cell and bulk RNASeq analysis scripts
  ☆12Updated 3 years ago
• shijianasdf / UsualRcode
  bioinformatics R test code
  ☆14Updated 2 weeks ago
• Shicheng-Guo / HowtoBook
  Readme
  ☆10Updated 5 years ago
• Xinglab / Myc-regulated_AS_PrCa_paper
  Scripts for plotting figures and running analysis throughout the manuscript
  ☆11Updated 3 years ago
• gandallab / devBrain_xQTL
  ☆10Updated 2 months ago
• ChongJenniferZhang / CLCA_WGS
  ☆25Updated last year
• bioinfo-biols / Code_for_circSC
  Analysis pipeline for our circSC manuscript
  ☆13Updated 3 years ago
• jinghuazhao / TWAS-pipeline
  TWAS-pipeline
  ☆22Updated 4 years ago
• xiayh17 / RNAseqStat2
  ☆16Updated 2 years ago
• iaaaka / evo-devo
  ☆11Updated 4 years ago
• hakyimlab / gtex-gwas-analysis
  ☆23Updated 3 years ago
• smlmbrt / SimilarityRegression
  Predicting TF sequence-specificity similarity with weighted alignments
  ☆13Updated 5 years ago
• DavidQuigley / WCDT_WGBS
  West Coast Dream Team Whole Genome Bisulfite Sequencing
  ☆15Updated 4 years ago
• twlab / TEProf2Paper
  TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data
  ☆25Updated 2 years ago
• dongwei1220 / R-Data-Visualization
  Data visualization with R
  ☆12Updated 4 years ago
• wanqingshao / TE_expression_in_scRNAseq
  ☆18Updated 4 years ago
• fenglin0 / benchmarking_variant_callers
  In this study, we perform systematic comparative analysis of seven widely-used SNV-calling methods, including SAMtools, the GATK Best Pra…
  ☆16Updated 5 years ago
• mdozmorov / RNA-seq
  RNA-seq analysis scripts
  ☆15Updated 2 months ago
• hakyimlab / PredictDB_Pipeline_GTEx_v7
  PredictDB Pipeline for GTEx v7 data
  ☆17Updated 2 years ago
• crazyhottommy / scCustomize
  Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆16Updated 3 years ago
• ZhaozzReal / IPAFinder
  Systematic analyses of intronic polyadenylation from standard RNAseq data
  ☆13Updated 10 months ago
• bsml320 / scGWAS
  A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …
  ☆25Updated 2 years ago
• maglab / Age-associated_cancer_genome
  ☆13Updated 4 years ago
• remap-cisreg / ReMapEnrich
  ReMapEnrich is a R-software package to identify significantly enriched regions from ReMap catalogues or user defined catalogues. ReMapEnr…
  ☆15Updated 3 years ago
• quevedor2 / aneuploidy_score
  R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…
  ☆16Updated 4 years ago
• molgenis / 1M-cells
  This is the repository which contains the code that was used to generate the results and figures of the “Single-cell RNA-sequencing revea…
  ☆11Updated last year
• roland-rad-lab / MoCaSeq
  Analysis pipelines for cancer genome sequencing in mice.
  ☆21Updated 11 months ago
• vallotlab / ChromSCape
  ChromSCape
  ☆14Updated last year