Alternatives and similar repositories for CSC2018

Users that are interested in CSC2018 are comparing it to the libraries listed below

• ManchesterBioinference / IntegratingATAC-RNA-HiC
  scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper
  ☆25Updated 3 years ago
• YutingPKU / Bulk_RNA-Seq_Workflow_Snakemake
  STAR, cufflinks, cluster, DESeq2, GO analysis
  ☆14Updated 5 years ago
• iaaaka / evo-devo
  ☆12Updated 4 years ago
• cemalley / scRNASeq-bulkRNASeq
  single cell and bulk RNASeq analysis scripts
  ☆14Updated 3 years ago
• theislab / GWAS-scRNAseq-Integration
  A Shiny tool to define the cell-type of action by integrating single cell expression data with GWAS
  ☆12Updated 7 years ago
• wanqingshao / TE_expression_in_scRNAseq
  ☆18Updated 5 years ago
• shijianasdf / UsualRcode
  bioinformatics R test code
  ☆14Updated 3 months ago
• bioinfo-biols / Code_for_circSC
  Analysis pipeline for our circSC manuscript
  ☆14Updated 3 years ago
• fenglin0 / benchmarking_variant_callers
  In this study, we perform systematic comparative analysis of seven widely-used SNV-calling methods, including SAMtools, the GATK Best Pra…
  ☆16Updated 6 years ago
• ZhaozzReal / IPAFinder
  Systematic analyses of intronic polyadenylation from standard RNAseq data
  ☆14Updated last year
• bsml320 / scGWAS
  A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …
  ☆26Updated 3 years ago
• hakyimlab / gtex-gwas-analysis
  ☆24Updated 4 years ago
• xiayh17 / RNAseqStat2
  ☆16Updated 2 years ago
• jinghuazhao / TWAS-pipeline
  TWAS-pipeline
  ☆24Updated 4 years ago
• twlab / TEProf2Paper
  TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data
  ☆27Updated 2 years ago
• BonevLab / Noack_et_al_NatNeuro2021
  Publication Page for the Noack et al. 2021 Nature Neuroscience paper
  ☆10Updated 3 years ago
• ChongJenniferZhang / CLCA_WGS
  ☆26Updated 2 years ago
• gandallab / devBrain_xQTL
  ☆11Updated 6 months ago
• crazyhottommy / scCustomize
  Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆16Updated 3 years ago
• DavidQuigley / WCDT_WGBS
  West Coast Dream Team Whole Genome Bisulfite Sequencing
  ☆15Updated 3 weeks ago
• YeoLab / gscripts
  General Use Scripts and Helper functions
  ☆16Updated 7 years ago
• YiPeng-Gao / scDaPars
  Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)
  ☆18Updated 4 years ago
• smlmbrt / SimilarityRegression
  Predicting TF sequence-specificity similarity with weighted alignments
  ☆13Updated 6 years ago
• a-velt / Mfuzz_RNAseq
  A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.
  ☆22Updated 6 years ago
• quevedor2 / aneuploidy_score
  R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…
  ☆16Updated 4 years ago
• ay-lab / ATACProc
  ATAC-seq processing pipeline
  ☆34Updated 3 years ago
• flemingtonlab / SpliceTools
  ☆17Updated last year
• Niinleslie / MesKit
  A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations
  ☆35Updated 3 years ago
• Xinglab / Myc-regulated_AS_PrCa_paper
  Scripts for plotting figures and running analysis throughout the manuscript
  ☆11Updated 4 years ago
• aslihankarabacak / FootprintPipeline
  Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets
  ☆12Updated 7 years ago