sajuukLyu / projectLSILinks
Project bulk/single-cell RNA-seq data to given LSI space
☆11Updated 3 years ago
Alternatives and similar repositories for projectLSI
Users that are interested in projectLSI are comparing it to the libraries listed below
Sorting:
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated 11 months ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated 10 months ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆41Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆67Updated 8 months ago
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆16Updated last year
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated last year
- Accurate and fast cell marker gene identification with COSG☆44Updated 3 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 7 months ago
- Functions for single cell data analysis☆32Updated 4 years ago
- ☆18Updated 3 years ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆35Updated last year
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆33Updated 3 weeks ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 5 months ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆16Updated 2 years ago
- scWGCNA☆61Updated 2 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- inferring regulatory cellular dynamics☆48Updated last week
- ☆31Updated 3 years ago
- Inferring CNV data from single cell ATAC seq☆23Updated this week
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Updated 3 years ago
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆33Updated 4 years ago
- ☆41Updated 4 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 6 months ago
- ☆49Updated 5 years ago
- The scripts used for the analyses in TOME project☆24Updated 7 months ago
- ☆47Updated 5 years ago
- Single cell epigenomic clustering based on accessibility pattern☆23Updated 2 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆38Updated last year
- Code repository for single cell RNA-seq☆35Updated 4 years ago
- Functional Inference of Gene Regulation☆45Updated 11 months ago