Alternatives and similar repositories for projectLSI:

Users that are interested in projectLSI are comparing it to the libraries listed below

• aet21 / SCENT
  Estimation of Single-Cell Potency with Single Cell Entropy
  ☆40Updated last year
• genecell / COSG
  Accurate and fast cell marker gene identification with COSG
  ☆43Updated last week
• jumphone / Vector
  Unsupervised Inference of Developmental Directions for Single Cells
  ☆21Updated last year
• ZJUFanLab / CellTalkDB
  A manually curated database of literature-supported ligand-receptor interactions in human and mouse
  ☆29Updated 9 months ago
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆62Updated 5 months ago
• ChanLab-UTSW / BreastCancer_Integrated
  ☆28Updated last month
• perou-lab / MultiK
  MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…
  ☆22Updated last year
• PaulingLiu / metaICB
  ☆22Updated 2 years ago
• smorabit / hdWGCNA_paper
  Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)
  ☆16Updated last year
• wanglabtongji / STRIDE
  STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …
  ☆26Updated last year
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆39Updated 2 months ago
• Xiaxy-XuLab / PanCAF
  ☆37Updated 2 years ago
• jumphone / FitDevo
  FitDevo: accurate inference of single-cell developmental potential using sample-specific gene weight
  ☆16Updated 11 months ago
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆31Updated 3 years ago
• HectorRDB / condiments
  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
  ☆26Updated 3 months ago
• phillipnicol / scDist
  Robust identification of perturbed cell types in single-cell RNA-seq data
  ☆31Updated 4 months ago
• Teichlab / SKM_ageing_atlas
  ☆12Updated 11 months ago
• Coolgenome / iTALK
  ☆59Updated 5 years ago
• liziyie / scDVA
  An R shiny based tool used for single cell RNA-seq data visualization and analysis.
  ☆33Updated 4 years ago
• HuangLabUMN / oncoPredict
  An R package for drug response prediction and drug-gene association prediction.
  ☆18Updated 11 months ago
• HaojiaWu / plot1cell
  A R package for advanced single cell data viz
  ☆66Updated last year
• SiyuanHuang1 / cpplot
  Visualize the results of cell-cell communication analysis
  ☆20Updated 2 years ago
• KChen-lab / bindSC
  Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…
  ☆34Updated last year
• immunogenomics / sceQTL
  Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)
  ☆18Updated last year
• snehamitra / SCARlink
  ☆50Updated 6 months ago
• omnideconv / spacedeconv
  A unified interface to spatial transcriptomics deconvolution tools
  ☆40Updated 3 weeks ago
• LungCellAtlas / scRNAseq_pipelines
  Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas
  ☆34Updated 4 years ago
• RegnerM2015 / scBreast_scRNA_scATAC_2024
  Repository to store code used for the analyses presented in "Defining the Regulatory Logic of Breast Cancer Using Single-Cell Epigenetic …
  ☆12Updated 2 weeks ago
• Teichlab / HCA_Heart_ver2
  ☆30Updated last year
• KlugerLab / DAseq
  ☆40Updated 3 years ago