GfellerLab / MixTCRpred

Related projects ⓘ

Alternatives and complementary repositories for MixTCRpred

• emmijokinen / TCRconv
  TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…
  ☆23Updated 2 years ago
• de-Boer-Lab / random-promoter-dream-challenge-2022
  ☆22Updated 7 months ago
• bernardo-de-almeida / DeepSTARR
  Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…
  ☆54Updated last year
• antigenomics / tcren-ms
  📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential
  ☆14Updated 2 weeks ago
• uio-bmi / immuneML
  immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.
  ☆62Updated this week
• IdoSpringer / ERGO-II
  ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction
  ☆29Updated 2 years ago
• XSLiuLab / Seq2Neo
  Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction
  ☆21Updated last year
• kmayerb / tcrdist3
  flexible CDR based distance metrics
  ☆55Updated 3 months ago
• andrewrech / antigen.garnish
  ☆46Updated 2 years ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆35Updated last year
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆40Updated 2 months ago
• tianshilu / pMTnet
  Deep Learning the T Cell Receptor Binding Specificity of Neoantigen
  ☆77Updated 2 years ago
• vagarwal87 / saluki_paper
  Saluki, a method to predict mRNA half-lives from sequence
  ☆22Updated 2 years ago
• pmoris / ImRex
  Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopes
  ☆15Updated last year
• antigenomics / vdjmatch
  ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities
  ☆38Updated 6 years ago
• mnielLab / NetTCR-2.0
  NetTCR-2.0. Sequence-based prediction of peptide-TCR binding
  ☆33Updated 2 years ago
• Teichlab / cell2tcr
  Inference of TCR motifs
  ☆26Updated 3 weeks ago
• statbiophys / OLGA
  Compute generation probabilities of CDR3 amino acid and nucleotide sequences
  ☆48Updated 3 years ago
• ncborcherding / Trex
  Using TCR and expression for sequence embedding
  ☆48Updated 3 weeks ago
• emmijokinen / TCRGP
  TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…
  ☆26Updated last year
• GfellerLab / PRIME
  PRedictor of IMmunogenic Epitopes
  ☆17Updated 6 months ago
• SchubertLab / mvTCR
  ☆45Updated 3 weeks ago
• MiraldiLab / maxATAC
  Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
  ☆26Updated last month
• brineylab / grp-paper
  Code and data used in The Great Repertoire Project
  ☆29Updated 3 years ago
• mdozmorov / ChIP-seq_notes
  Notes on ChIP-seq and other-seq-related tools
  ☆22Updated 4 months ago
• immunoengineer / gliph
  Grouping of Lymphocyte Interactions by Paratope Hotspots
  ☆90Updated 3 years ago
• pinellolab / EPInformer
  code to run EPInformer for gene expression prediction and gene-enhancer links prioritization
  ☆31Updated this week
• tanjimin / C.Origami
  C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.
  ☆66Updated 4 months ago
• Illumina / PrimateAI-3D
  ☆61Updated 4 months ago
• GreiffLab / immuneSIM
  ☆38Updated 11 months ago