Predictor of TCR-epitope interactions
☆36Sep 9, 2025Updated 9 months ago
Alternatives and similar repositories for MixTCRpred
Users that are interested in MixTCRpred are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CLIP-based model for aligning epitopes to immune receptors☆11Apr 30, 2025Updated last year
- Pan-cancer quantification of neoantigen-mediated immunoediting in cancer evolution☆14May 4, 2022Updated 4 years ago
- python tools for TCR:peptide-MHC modeling and analysis☆93Apr 12, 2024Updated 2 years ago
- Convert TCR gene names☆15Dec 26, 2025Updated 5 months ago
- Large language modeling applied to T-cell receptor (TCR) sequences.☆60May 4, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A unified cross-attention model for predicting antigen binding specificity to both HLA and TCR molecules☆13May 29, 2026Updated 2 weeks ago
- ☆22Oct 4, 2022Updated 3 years ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆35Apr 1, 2022Updated 4 years ago
- A script to run HLA typing tools from next generation sequencing data☆12Jan 4, 2023Updated 3 years ago
- HLA-II ligand predictor.☆46Apr 6, 2023Updated 3 years ago
- 📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential☆25May 20, 2026Updated 3 weeks ago
- TLimmuno2: predicting MHC class II antigen immunogenicity through transfer learning☆13Jun 19, 2023Updated 2 years ago
- ☆15Nov 13, 2023Updated 2 years ago
- ☆54Dec 3, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆91Jun 14, 2022Updated 3 years ago
- This repository contained single-cell RNA-seq datasets with ICB treated patients☆17Nov 8, 2024Updated last year
- HLA-I ligand predictor☆46Mar 19, 2026Updated 2 months ago
- An antibody-specific language model focusing on NGL prediction☆28Mar 8, 2025Updated last year
- ☆15Jun 27, 2024Updated last year
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆24Feb 17, 2023Updated 3 years ago
- ☆63Feb 21, 2026Updated 3 months ago
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…☆31Jul 12, 2025Updated 11 months ago
- ☆24Dec 11, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Pipeline to detect HLA disruption from WES and RNAseq data☆22Feb 17, 2025Updated last year
- TEIM: TCR-Epitope Interaction Modeling☆59Jul 26, 2023Updated 2 years ago
- ☆18Nov 18, 2025Updated 6 months ago
- ☆17Jun 24, 2021Updated 4 years ago
- Official open-source of Accurate structure prediction of immune proteins using parameter-efficient transfer learning☆24Mar 19, 2025Updated last year
- Hclust2 is a handy tool for plotting heat-maps with several useful options to produce high quality figures that can be used in publicatio…☆13Jan 14, 2023Updated 3 years ago
- An R package for correcting p-values for multiple hypothesis testing in comparative quantitative omics experiments using permutation-base…☆12Mar 11, 2026Updated 3 months ago
- Predicting immunogenic peptide recognized by TCR through ensemble deep learning☆18Apr 22, 2024Updated 2 years ago
- Automatically annotate cell types, consistently across samples.☆23Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆69Apr 29, 2026Updated last month
- ☆18Updated this week
- Sequence-based prediction of peptide-TCR interactions using paired chain data☆13Feb 2, 2026Updated 4 months ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆80Apr 1, 2023Updated 3 years ago
- A scanpy extension to analyse single-cell TCR and BCR data.☆256Updated this week
- flexible CDR based distance metrics☆72Dec 16, 2025Updated 5 months ago
- Using TCR and expression for sequence embedding☆63Jan 6, 2026Updated 5 months ago