GfellerLab / MixTCRpred
Predictor of TCR-epitope interactions
☆21Updated last month
Alternatives and similar repositories for MixTCRpred:
Users that are interested in MixTCRpred are comparing it to the libraries listed below
- ☆26Updated 3 weeks ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆38Updated last month
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆57Updated last year
- HLA-II ligand predictor.☆40Updated last year
- Computational Optimization of DNA Activity (CODA)☆55Updated last month
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆21Updated 2 years ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆29Updated 2 years ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆66Updated this week
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆35Updated 3 months ago
- R package for the analysis of single-cell immune repertoires☆42Updated 2 weeks ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆23Updated 2 years ago
- CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets☆50Updated 4 months ago
- flexible CDR based distance metrics☆57Updated 6 months ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆27Updated last week
- 📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential☆16Updated last month
- ☆47Updated 2 years ago
- ☆17Updated 4 months ago
- ☆50Updated 3 months ago
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆77Updated 2 years ago
- Inference of TCR motifs☆29Updated 3 weeks ago
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆50Updated 3 years ago
- Using TCR and expression for sequence embedding☆51Updated 2 weeks ago
- Dataloader for applying sequence models to personalized genomics☆22Updated this week
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆16Updated last month
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆70Updated 7 months ago
- Molecular interactions inference from single-cell multi-omics data☆22Updated 3 months ago
- ☆37Updated 4 years ago
- ☆27Updated last month
- ExplaiNN: interpretable and transparent neural networks for genomics☆47Updated this week
- ☆41Updated last year