GfellerLab / MixTCRpredLinks
Predictor of TCR-epitope interactions
☆34Updated 2 months ago
Alternatives and similar repositories for MixTCRpred
Users that are interested in MixTCRpred are comparing it to the libraries listed below
Sorting:
- Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopes☆17Updated 2 years ago
- HLA-II ligand predictor.☆45Updated 2 years ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 3 years ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆35Updated 3 years ago
- 📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential☆24Updated 2 months ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆34Updated 3 years ago
- flexible CDR based distance metrics☆69Updated 3 weeks ago
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆62Updated 2 weeks ago
- Functional Embedding of Gene Signatures☆48Updated last year
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆73Updated 2 weeks ago
- Computational Optimization of DNA Activity (CODA)☆65Updated 8 months ago
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆86Updated 3 years ago
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆30Updated 2 years ago
- PRedictor of IMmunogenic Epitopes☆25Updated 2 months ago
- ☆34Updated 10 months ago
- ☆27Updated 8 months ago
- Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"☆16Updated 4 years ago
- Large language modeling applied to T-cell receptor (TCR) sequences.☆57Updated 3 years ago
- HLA-I ligand predictor☆43Updated 2 months ago
- ☆31Updated 5 months ago
- ☆17Updated 2 weeks ago
- Absolve antibody variable domain sequence analysis☆18Updated 7 years ago
- RiboNN: predicting translation efficiencies from mRNA sequences☆42Updated 2 months ago
- ☆82Updated 2 years ago
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆28Updated 7 months ago
- Shiny app to easily create publishable plots for scientific papers☆39Updated 3 months ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆82Updated last year
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆60Updated 3 months ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆56Updated last year
- ☆38Updated 2 years ago