GfellerLab / MixTCRpredLinks
Predictor of TCR-epitope interactions
☆34Updated 3 weeks ago
Alternatives and similar repositories for MixTCRpred
Users that are interested in MixTCRpred are comparing it to the libraries listed below
Sorting:
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 2 years ago
- HLA-II ligand predictor.☆44Updated 2 years ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆35Updated 3 years ago
- Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopes☆17Updated 2 years ago
- 📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential☆21Updated last week
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆34Updated 3 years ago
- PRedictor of IMmunogenic Epitopes☆24Updated last week
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆69Updated 2 weeks ago
- Functional Embedding of Gene Signatures☆46Updated last year
- flexible CDR based distance metrics☆67Updated last year
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆59Updated 4 years ago
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…☆30Updated 2 months ago
- ☆32Updated 8 months ago
- Computational Optimization of DNA Activity (CODA)☆61Updated 6 months ago
- Absolve antibody variable domain sequence analysis☆18Updated 7 years ago
- Large language modeling applied to T-cell receptor (TCR) sequences.☆56Updated 3 years ago
- ☆38Updated last year
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆56Updated last year
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆30Updated 2 years ago
- ☆80Updated 2 years ago
- HLA-I ligand predictor☆43Updated last week
- MHC Class I and Class II neoantigen binding prediction☆32Updated 2 months ago
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆84Updated 3 years ago
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆59Updated last month
- deep learning-inspired explainable sequence model for transcription initiation☆96Updated 7 months ago
- ☆41Updated 2 months ago
- Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"☆16Updated 4 years ago
- Python package to load and query ARCHS4 data☆23Updated 2 months ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- Deep Learning Method to Identify Cancer Associated TCRs☆47Updated 3 years ago