hammerlab / bai-indexerLinks
Build an index for your BAM Index (BAI)
☆17Updated 10 years ago
Alternatives and similar repositories for bai-indexer
Users that are interested in bai-indexer are comparing it to the libraries listed below
Sorting:
- Library for indexing VCF files for random access searches by rsID☆17Updated 2 weeks ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 7 years ago
- 🍶 Genome assembly with short sequence reads☆25Updated last year
- BED QC tool (in the making)☆16Updated 2 years ago
- Intersect multiple VCF files with haplotype awareness☆25Updated 4 years ago
- Demonstrating best practices for bioinformatics command line tools☆26Updated 5 years ago
- Docker containers for bioinformatics with a small footprint☆23Updated last year
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 2 months ago
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆22Updated 5 years ago
- drunk on perbase pileups and lua expressions☆19Updated 2 months ago
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆33Updated last year
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- programs and scripts, mainly python, for analyses related to nucleic or protein sequences☆24Updated this week
- reference free variant assembly☆33Updated 2 years ago
- k-mer similarity analysis pipeline☆22Updated last month
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- ☆22Updated last year
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Updated 5 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 3 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 4 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆27Updated last year
- NGS duplicate marking☆19Updated 4 years ago
- Cromwell output organizer☆13Updated 4 years ago
- Fast sequencing data quality metrics☆27Updated 2 months ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆18Updated 6 years ago