hammerlab / bai-indexer
Build an index for your BAM Index (BAI)
☆17Updated 9 years ago
Alternatives and similar repositories for bai-indexer:
Users that are interested in bai-indexer are comparing it to the libraries listed below
- Library for visualising genomic features in Python.☆15Updated 7 years ago
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- k-mer similarity analysis pipeline☆20Updated last month
- ☆21Updated last year
- Simplify snpEff annotations for interesting cases☆21Updated 6 years ago
- Structural variant (SV) analysis tools☆35Updated 8 months ago
- Demonstrating best practices for bioinformatics command line tools☆26Updated 4 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 2 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 3 weeks ago
- Exploration, clustering, visualization and classification of DNA damage patterns☆19Updated 4 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 5 years ago
- Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data☆13Updated 5 years ago
- Converts 'MultiQC' Reports into Tidy Data Frames☆18Updated 11 months ago
- A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data☆12Updated last year
- Annotating principal splice isoforms☆14Updated 5 months ago
- Fast sequencing data quality metrics☆25Updated this week
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Intersect multiple VCF files with haplotype awareness☆25Updated 4 years ago
- Tools for generating and decoding error-correcting DNA barcodes☆16Updated 3 years ago
- A command line tool to compute mapping statistics from a BAM file☆23Updated 3 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- programs and scripts, mainly python, for analyses related to nucleic or protein sequences☆24Updated 3 weeks ago
- Docker containers for bioinformatics with a small footprint☆23Updated last year
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆21Updated 5 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- Work for the tree sequence inference paper.☆23Updated 4 years ago
- RNA-seq data comprehensive data analysis toolbox☆19Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago