hammerlab / bai-indexerView external linksLinks
Build an index for your BAM Index (BAI)
☆17Apr 14, 2015Updated 10 years ago
Alternatives and similar repositories for bai-indexer
Users that are interested in bai-indexer are comparing it to the libraries listed below
Sorting:
- Library for visualising genomic features in Python.☆15May 12, 2017Updated 8 years ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 7 years ago
- Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point f…☆11Dec 11, 2020Updated 5 years ago
- A command line program for large scale buffering between piped programs☆16Nov 19, 2021Updated 4 years ago
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆22Nov 22, 2019Updated 6 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- Analysis for svaseq paper☆20Aug 20, 2014Updated 11 years ago
- Library for indexing VCF files for random access searches by rsID☆17Feb 2, 2026Updated last week
- Workflow Description Language (WDL) scripts for common vg workflows☆23Dec 15, 2025Updated last month
- SVG based genome viewer written in javascript using D3☆33Jul 12, 2015Updated 10 years ago
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆21Jan 23, 2026Updated 3 weeks ago
- Tool for RNA-Seq analysis.☆39Apr 1, 2022Updated 3 years ago
- LAAVA: Long-read AAV Analysis☆13Dec 9, 2025Updated 2 months ago
- A CNN model to identify MEIs in WGS☆12Mar 4, 2025Updated 11 months ago
- 1000 Genomes Project Metadata R Package☆20Oct 27, 2025Updated 3 months ago
- Structural variant (SV) analysis tools☆40Jul 1, 2024Updated last year
- Variant Call Format (VCF) parser☆25Jan 21, 2026Updated 3 weeks ago
- Python deployment tool for bespoke image curation projects, oriented toward scientific projects. Please cite https://academic.oup.com/gig…☆13Aug 6, 2022Updated 3 years ago
- ☆10Nov 3, 2025Updated 3 months ago
- ☆13Apr 18, 2022Updated 3 years ago
- A dotplot application for DNA/RNA sequence☆11Nov 28, 2022Updated 3 years ago
- Non Metric Space ( Approximate ) Library in R☆12Feb 2, 2023Updated 3 years ago
- renders a KEGGML file and displays a KEGG pathway☆10Jul 14, 2016Updated 9 years ago
- A varitation graph tool☆10Dec 23, 2019Updated 6 years ago
- Documentation for NCBI BLAST AMI☆11Feb 28, 2022Updated 3 years ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Mar 29, 2023Updated 2 years ago
- Cool Bioinformatics Scripts☆12May 21, 2024Updated last year
- R package implementing affinity propagation clustering along with various utilities☆12Sep 9, 2025Updated 5 months ago
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated last month
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆27Nov 25, 2025Updated 2 months ago
- Indel-aware consensus for aligned BAM☆21Aug 16, 2025Updated 5 months ago
- Run multiple programs to check if a VCF is usable☆11May 15, 2020Updated 5 years ago
- A python graphing library for plotting multiple sequence alignments. An app build on top that runs everything in your browser.☆23Dec 8, 2025Updated 2 months ago
- ☆12Sep 11, 2025Updated 5 months ago
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆26Oct 5, 2015Updated 10 years ago
- TRGT Repeat expansion summary☆11Apr 10, 2023Updated 2 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Oct 8, 2021Updated 4 years ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- Target prediction☆13May 8, 2020Updated 5 years ago