Build an index for your BAM Index (BAI)
☆17Apr 14, 2015Updated 11 years ago
Alternatives and similar repositories for bai-indexer
Users that are interested in bai-indexer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point f…☆11Dec 11, 2020Updated 5 years ago
- Library for visualising genomic features in Python.☆16May 12, 2017Updated 9 years ago
- Workflow Description Language (WDL) scripts for common vg workflows☆25Jun 1, 2026Updated last month
- Run multiple programs to check if a VCF is usable☆11May 15, 2020Updated 6 years ago
- ☆12Apr 18, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- A command line program for large scale buffering between piped programs☆17Nov 19, 2021Updated 4 years ago
- Tool for RNA-Seq analysis.☆40Apr 1, 2022Updated 4 years ago
- Cool Bioinformatics Scripts☆12May 21, 2024Updated 2 years ago
- A short tandem repeat (STR) genotyping and analysis toolkit for long reads☆19Updated this week
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆23Jan 23, 2026Updated 5 months ago
- Analysis for svaseq paper☆20Aug 20, 2014Updated 11 years ago
- VCF (variant call format) parser☆26Jun 26, 2026Updated last week
- Curriculum Vitae☆14May 8, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Highly Open Workflow for Annotation & Ranking toward genomic variant Discovery☆13Jun 26, 2026Updated last week
- TRGT Repeat expansion summary☆10Apr 10, 2023Updated 3 years ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Mar 29, 2023Updated 3 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆39Dec 30, 2025Updated 6 months ago
- Library for indexing VCF files for random access searches by rsID☆17Mar 2, 2026Updated 4 months ago
- A python graphing library for plotting multiple sequence alignments. An app build on top that runs everything in your browser.☆27Mar 22, 2026Updated 3 months ago
- Structural variant (SV) analysis tools☆41Jul 1, 2024Updated 2 years ago
- Non Metric Space ( Approximate ) Library in R☆12Feb 2, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Mar 12, 2018Updated 8 years ago
- LAAVA: Long-read AAV Analysis☆13Dec 9, 2025Updated 6 months ago
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆23Nov 22, 2019Updated 6 years ago
- Container-based Slurm cluster with support for running on multiple ssh-accessible computers. Currently it is based on podman, systemd, no…☆25Dec 21, 2020Updated 5 years ago
- Target prediction☆14May 8, 2020Updated 6 years ago
- A varitation graph tool☆10Dec 23, 2019Updated 6 years ago
- Formatter for R☆14Nov 10, 2023Updated 2 years ago
- A collection of easy to explore and reuse data loader examples in Observable Framework.☆17Apr 25, 2024Updated 2 years ago
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated 6 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- 1000 Genomes Project Metadata R Package☆21Oct 27, 2025Updated 8 months ago
- Keep Me Around: Intron Retention Detection☆30Jan 30, 2019Updated 7 years ago
- Convert .gbk or .embl to .gff (and optionally .fa) (required for QUAST)☆17Jun 19, 2014Updated 12 years ago
- MHC-II presentation predictor☆13Aug 11, 2023Updated 2 years ago
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆26Oct 5, 2015Updated 10 years ago
- A CNN model to identify MEIs in WGS☆13Mar 4, 2025Updated last year
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆49Jun 2, 2020Updated 6 years ago