Alternatives and similar repositories for ncbi

Users that are interested in ncbi are comparing it to the libraries listed below

• shenwei356 / bio
  A lightweight and high-performance bioinformatics package in Golang
  ☆95Updated 2 months ago
• vertgenlab / gonomics
  A collection of genomics software tools written in Go (golang).
  ☆86Updated this week
• minoTour / minoTour_archive
  Real time data analysis tools for the minION sequencing platform.
  ☆30Updated 3 years ago
• chadlaing / Panseq
  Pan-genomic sequence analysis
  ☆46Updated 3 years ago
• brentp / vcfgo
  a golang library to read, write and manipulate files in the variant call format.
  ☆72Updated 4 months ago
• shenwei356 / unikmer
  A versatile toolkit for k-mers with taxonomic information
  ☆81Updated 4 months ago
• GATB / gatb-core
  Core library of the Genome Analysis Toolbox with de-Bruijn graph
  ☆65Updated 11 months ago
• iqbal-lab-org / gramtools
  Genome inference from a population reference graph
  ☆96Updated 9 months ago
• evolbioinfo / goalign
  Goalign is a set of command line tools and an API to manipulate multiple sequence alignments. It is implemented in Go language.
  ☆87Updated 3 weeks ago
• bcgsc / arcs
  🌈Scaffold genome sequence assemblies using linked or long read sequencing data
  ☆94Updated last year
• human-pangenomics / hpp_production_workflows
  WDL’s and Dockerfiles for assembly QC process
  ☆71Updated 5 months ago
• nanoporetech / minknow_api
  Protobuf and gRPC specifications for the MinKNOW API
  ☆66Updated 2 months ago
• shenwei356 / go4bio
  Golang for Bioinformatics
  ☆31Updated 9 years ago
• ncbi / sratoolkit
  SRAToolkit has been REPLACED - see README
  ☆37Updated 9 years ago
• brentp / bigly
  a pileup library that embraces the huge
  ☆43Updated 5 years ago
• jts / bam2fastq
  Simple convertor from bam to FASTQ
  ☆26Updated 10 years ago
• tseemann / VelvetOptimiser
  Automatically optimise three of Velvet's assembly parameters.
  ☆48Updated 3 years ago
• NBISweden / EMBLmyGFF3
  An efficient way to convert gff3 annotation files into EMBL format ready to submit.
  ☆66Updated 5 months ago
• zeeev / wham
  Structural variant detection and association testing
  ☆108Updated 2 years ago
• Cibiv / NextGenMap
  NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms whil…
  ☆88Updated 6 years ago
• nanoporetech / wub
  Tools and software library developed by the ONT Applications group
  ☆64Updated 4 years ago
• guyduche / Blast2Bam
  Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.
  ☆50Updated 4 years ago
• jonas-fuchs / varVAMP
  Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
  ☆45Updated this week
• ksahlin / isONclust
  De novo clustering of long transcript reads into genes
  ☆69Updated 8 months ago
• BenLangmead / aws-indexes
  Catalog of genomic indexes freely available from public clouds
  ☆65Updated 2 months ago
• nanoporetech / katuali
  Analysis pipelines from Oxford Nanopore Technologies' Research Division
  ☆50Updated 5 years ago
• CSB5 / lofreq
  LoFreq Star: Sensitive variant calling from sequencing data
  ☆108Updated 2 months ago
• jstjohn / SimSeq
  An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…
  ☆68Updated 11 years ago
• epi2me-labs / wf-amplicon
  ☆42Updated 3 weeks ago
• PacificBiosciences / PacBioFileFormats
  Specifications for PacBio® native file formats
  ☆31Updated last year