Alternatives and similar repositories for ncbi:

Users that are interested in ncbi are comparing it to the libraries listed below

• pbenner / gonetics
  Go / Golang Bioinformatics Library
  ☆45Updated 3 months ago
• shenwei356 / bio
  A lightweight and high-performance bioinformatics package in Golang
  ☆92Updated 4 months ago
• brentp / vcfgo
  a golang library to read, write and manipulate files in the variant call format.
  ☆68Updated 3 months ago
• ecerami / samtools_primer
  SAMtools: A Primer
  ☆14Updated 10 years ago
• bow / crimson
  Bioinformatics tool outputs converter to JSON or YAML
  ☆36Updated 2 months ago
• human-pangenomics / hpp_production_workflows
  WDL’s and Dockerfiles for assembly QC process
  ☆63Updated this week
• chadlaing / Panseq
  Pan-genomic sequence analysis
  ☆43Updated 2 years ago
• brentp / bigly
  a pileup library that embraces the huge
  ☆42Updated 4 years ago
• NBISweden / EMBLmyGFF3
  An efficient way to convert gff3 annotation files into EMBL format ready to submit.
  ☆59Updated 10 months ago
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆32Updated last week
• dzerbino / oases
  De novo transcriptome assembler for short reads
  ☆62Updated 6 years ago
• GATB / gatb-core
  Core library of the Genome Analysis Toolbox with de-Bruijn graph
  ☆63Updated last month
• seqan / lambda
  LAMBDA – the Local Aligner for Massive Biological DatA
  ☆77Updated 4 months ago
• grenaud / deML
  Maximum likelihood demultiplexing
  ☆46Updated last year
• ArtRand / signalAlign
  HMM-HDP models for MinION signal alignments
  ☆46Updated 7 years ago
• bcgsc / arcs
  🌈Scaffold genome sequence assemblies using linked or long read sequencing data
  ☆91Updated 2 months ago
• grailbio / bio
  Bioinformatic infrastructure libraries
  ☆77Updated 4 years ago
• ncbi / sratoolkit
  SRAToolkit has been REPLACED - see README
  ☆36Updated 8 years ago
• niu-lab / gclust
  genome sized sequences clustering
  ☆13Updated 4 years ago
• shenwei356 / unikmer
  A versatile toolkit for k-mers with taxonomic information
  ☆76Updated 5 months ago
• jonas-fuchs / varVAMP
  Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
  ☆34Updated 4 months ago
• groupschoof / AHRD
  High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.
  ☆64Updated last year
• snugel / cas-offinder
  An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.
  ☆88Updated 2 years ago
• guigolab / FA-nf
  Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow
  ☆17Updated 2 years ago
• Nazeeefa / awesome-sequencing-tech-papers
  A collection of publications on comparison of high-throughput sequencing technologies.
  ☆26Updated 2 weeks ago
• bcgsc / transabyss
  de novo assembly of RNA-seq data using ABySS
  ☆34Updated last year
• cbg-ethz / shorah
  Repo for the software suite ShoRAH (Short Reads Assembly into Haplotypes)
  ☆40Updated last year
• mozack / abra
  Assembly Based ReAligner
  ☆72Updated 6 years ago
• lfaino / LoReAn
  Long Reads Annotation pipeline
  ☆71Updated 2 years ago
• Duke-GCB / GGR-cwl
  CWL tools and workflows for GGR
  ☆21Updated 3 years ago