biogo / ncbi
bíogo ncbi utilities repository
☆18Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for ncbi
- SRAToolkit has been REPLACED - see README☆36Updated 8 years ago
- A versatile toolkit for k-mers with taxonomic information☆75Updated 3 months ago
- method to estimate PCR duplication rate from high-throughput sequencing data☆14Updated 7 years ago
- full taxonomer cython repository☆22Updated 4 years ago
- High-level API for storing and querying sequence variant data☆20Updated 5 years ago
- Maximum likelihood demultiplexing☆46Updated last year
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆66Updated 10 years ago
- Pan-genomic sequence analysis☆43Updated 2 years ago
- Real time data analysis tools for the minION sequencing platform.☆30Updated 2 years ago
- a pileup library that embraces the huge☆42Updated 4 years ago
- Pair-End AssembeR☆25Updated 10 years ago
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆32Updated last year
- A lightweight and high-performance bioinformatics package in Golang☆92Updated last month
- Methylation Phasing for Nanopore Sequencing☆44Updated last year
- a golang library to read, write and manipulate files in the variant call format.☆67Updated last month
- An efficient way to convert gff3 annotation files into EMBL format ready to submit.☆59Updated 7 months ago
- Error correction and variant calling algorithm for nanopore sequencing☆25Updated 8 years ago
- Golang for Bioinformatics☆31Updated 8 years ago
- Scaffolding with RNA-seq read alignment☆20Updated 6 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆45Updated 5 years ago
- Genome Annotation Library - A perl toolkit for working with SO compliant genome annotations☆17Updated last year
- ☆35Updated last year
- DRUMMER: Detection of RNA modifications in nanopore direct RNA Sequencing datasets☆21Updated 2 years ago
- d'accord is a non hybrid long read consensus program based on local de Bruijn graph assembly☆19Updated 6 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆32Updated 2 months ago
- Various scripts and recipes for working with nanopore data☆34Updated 8 years ago
- Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes☆15Updated 3 years ago
- lobSTR: a short tandem repeat profiler for next generation sequencing data☆50Updated last year
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Updated 2 years ago
- GCLib - Genomic C++ library of reusable code for bioinformatics projects☆33Updated 4 months ago