nanoporetech / isONclust2
A tool for de novo clustering of long transcriptomic reads
☆14Updated 2 years ago
Alternatives and similar repositories for isONclust2:
Users that are interested in isONclust2 are comparing it to the libraries listed below
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆56Updated last month
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated 3 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆30Updated 2 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated last month
- ☆14Updated 9 months ago
- Fast and scalable nanopore adaptive sampling☆33Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated last month
- crab go snap snap☆35Updated this week
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 3 years ago
- Improved Phased Assembler☆27Updated 2 years ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆18Updated 3 weeks ago
- Tumour-only somatic mutation calling using long reads☆25Updated 3 months ago
- A gene fusion caller for long-read transcriptome sequencing data.☆17Updated 9 months ago
- ☆41Updated 2 months ago
- Segmental Duplication Assembler (SDA).☆44Updated last year
- ☆31Updated last month
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 3 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆28Updated last year
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆26Updated 4 months ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated 9 months ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Tool for demultiplexing Nanopore barcode sequence data☆20Updated 3 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆15Updated 6 years ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆18Updated 5 months ago