nanoporetech / isONclust2Links
A tool for de novo clustering of long transcriptomic reads
☆15Updated 2 years ago
Alternatives and similar repositories for isONclust2
Users that are interested in isONclust2 are comparing it to the libraries listed below
Sorting:
- Correcting errors in noisy long reads using variation graphs☆52Updated 2 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 8 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆44Updated 2 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated last month
- Improved Phased Assembler☆28Updated 3 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆50Updated 5 months ago
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆35Updated last month
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 2 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Kmer Analysis of Pileups for Genotyping☆32Updated this week
- MethPhaser: methylation-based haplotype phasing of human genomes☆48Updated 5 months ago
- ☆21Updated 6 months ago
- ☆31Updated last year
- Linear-time de novo Long Read Assembler☆41Updated 7 months ago
- ☆48Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 4 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆42Updated 4 months ago
- Population-wide Deletion Calling☆35Updated 4 months ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated last year
- A module for improving the insertion sequences of structural variant calls☆31Updated 4 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated 2 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆37Updated 6 months ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- ☆44Updated last month
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 11 months ago
- Structural variant caller☆55Updated 3 years ago
- ☆27Updated 2 years ago
- Minimizer-based assembly scaffolding and mapping using long reads☆43Updated 10 months ago