A tool for de novo clustering of long transcriptomic reads
☆14Oct 2, 2022Updated 3 years ago
Alternatives and similar repositories for isONclust2
Users that are interested in isONclust2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline for de novo clustering of long transcriptomic reads☆26Jan 26, 2022Updated 4 years ago
- De novo clustering of long transcript reads into genes☆80Apr 27, 2025Updated last year
- An algorithm for centromere assembly using long error-prone reads☆25May 25, 2021Updated 5 years ago
- Error correction of ONT transcript reads☆58Sep 6, 2023Updated 2 years ago
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Reference-free clustering and consensus forming of long-read amplicon sequencing☆67Apr 21, 2025Updated last year
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆10Jul 16, 2017Updated 9 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆29Apr 22, 2024Updated 2 years ago
- ☆14Sep 26, 2019Updated 6 years ago
- A tool to quantify sub-genomic RNA (sgRNA) expression in SARS-CoV-2 artic network amplicon nanopore sequencing data.☆17May 30, 2022Updated 4 years ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆16Feb 20, 2023Updated 3 years ago
- Simple tools for working with Hi-C data☆20Dec 19, 2018Updated 7 years ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆30May 25, 2026Updated 2 months ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆85Jul 4, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A versatile toolkit for k-mers with taxonomic information☆84Aug 28, 2025Updated 10 months ago
- Analysis Pipeline to analyze Nanopore RNAseq data☆29Mar 1, 2022Updated 4 years ago
- A versatile sequenced read processor for nanopore direct RNA sequencing☆81May 24, 2020Updated 6 years ago
- De novo construction of isoforms from long-read data☆38Jul 2, 2026Updated 3 weeks ago
- Functions to extract information from Oxford Nanopore sequencing data and alignments☆11Jun 15, 2026Updated last month
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆110Feb 7, 2023Updated 3 years ago
- Integrated toolkit for analysis and evaluation of annotated genomes☆25Aug 1, 2025Updated 11 months ago
- multi-tool QC for minion data☆10May 28, 2018Updated 8 years ago
- Nanopore UMI-linked consensus sequencing☆18Feb 11, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- C++ library for parsing several formats in bioinformatics☆10May 18, 2023Updated 3 years ago
- ☆39Feb 22, 2023Updated 3 years ago
- Long read to reference genome mapping tool☆13Mar 14, 2024Updated 2 years ago
- A segmentation toolkit for segment the Nanopore RNA signal.☆20Feb 18, 2025Updated last year
- Oxford Nanopore HDF/Fast5 to CRAM conversion tool☆22Dec 30, 2019Updated 6 years ago
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆204May 4, 2023Updated 3 years ago
- ☆78Jun 12, 2020Updated 6 years ago
- Research release basecalling models and configurations☆120May 20, 2026Updated 2 months ago
- The repository for codes developed to generated the Maize NC358 assemblies and analyses.☆10Apr 23, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Multi-sample transcriptome assembly from RNA-Seq☆26Jun 10, 2018Updated 8 years ago
- Methylation/modified base calling separated from basecalling.☆188Sep 17, 2024Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆68Oct 11, 2024Updated last year
- De novo clustering of long transcript reads into genes☆25Dec 15, 2025Updated 7 months ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆56Feb 6, 2024Updated 2 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆36Aug 4, 2021Updated 4 years ago
- NanopolishComp is a Python3 package for downstream analyses of Nanopolish output files☆10Dec 22, 2020Updated 5 years ago