SexChrLab / XYalignLinks
☆29Updated 6 years ago
Alternatives and similar repositories for XYalign
Users that are interested in XYalign are comparing it to the libraries listed below
Sorting:
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- Structural variant (SV) analysis tools☆40Updated last year
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Updated 4 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆22Updated 4 years ago
- ☆51Updated 6 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated 7 months ago
- Exploration of controlled loss of quality values for compressing CRAM files☆36Updated 2 years ago
- Personal diploid genome creation and coordinate conversion☆30Updated 10 months ago
- PopSTR - A Population based microsatellite genotyper☆32Updated 2 years ago
- ☆35Updated 4 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated last week
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆25Updated 4 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Population-wide Deletion Calling☆35Updated 9 months ago
- Integrative analysis of structural variations.☆40Updated 2 years ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- Immuological gene typing and annotation for genome assembly☆38Updated 10 months ago
- A set of tools to annotate VCF files with expression and readcount data☆30Updated last week
- Mapped QC analysis program☆43Updated 7 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Updated 6 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated last year
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 5 years ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago