ginolhac / mapDamageLinks
mapDamage: tracking and quantifying damage patterns in ancient DNA sequences
☆48Updated 6 months ago
Alternatives and similar repositories for mapDamage
Users that are interested in mapDamage are comparing it to the libraries listed below
Sorting:
- Implementation of the multiple sequential markovian coalescent☆90Updated 6 months ago
- Estimate recombination rates from population genetic data☆71Updated 5 years ago
- Interim data for the Darwin Tree of Life Project☆33Updated 5 years ago
- a bash pipeline for RAD sequencing☆55Updated last year
- Pipelines and tools for the processing of ancient and modern HTS data.☆48Updated this week
- ☆66Updated 3 years ago
- A program for the Maximum-likelihood analysis of population genomic data.☆30Updated 4 years ago
- A statistical framework for ploidy estimation using NGS short-read data☆62Updated 7 years ago
- software for UCE (and general) phylogenomics☆87Updated 2 months ago
- A set of functions to visualise genotypes based on a VCF☆88Updated 4 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆77Updated 4 years ago
- Methods for examining PCA locally along the genome.☆88Updated last year
- An Efficient Swiss Army Knife for Population Genomic Analyses in R☆38Updated last year
- A collection of scripts for processing fastq files in ways to improve de novo transcriptome assemblies, and for evaluating those assembli…☆51Updated last year
- mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.☆88Updated 4 years ago
- Detecting natural selection from population-based genetic data☆28Updated 6 years ago
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆88Updated 7 years ago
- Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.☆87Updated last week
- Automatically exported from code.google.com/p/jmodeltest2☆82Updated 4 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆46Updated last week
- A pipeline that accepts a VCF file to run through Admixture☆63Updated last year
- Pipeline to take VCF through to Selection Analysis.☆58Updated 3 years ago
- ☆34Updated 2 years ago
- ☆21Updated 6 years ago
- Automated de novo assembly of whole chloroplast genomes.☆48Updated last year
- PartitionFinder discovers optimal partitioning schemes for DNA sequences.☆71Updated 4 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆68Updated 4 years ago
- de novo virus assembler of Illumina paired reads☆58Updated 4 years ago
- Population genetic summary statistics☆40Updated 2 years ago
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago