ginolhac / mapDamage
mapDamage: tracking and quantifying damage patterns in ancient DNA sequences
☆43Updated 4 months ago
Alternatives and similar repositories for mapDamage:
Users that are interested in mapDamage are comparing it to the libraries listed below
- Scripts to calculate population genetics statistics☆55Updated 6 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- a bash pipeline for RAD sequencing☆52Updated 8 months ago
- Automated de novo assembly of whole chloroplast genomes.☆44Updated 3 months ago
- ☆43Updated last year
- Estimate recombination rates from population genetic data☆62Updated 4 years ago
- Interim data for the Darwin Tree of Life Project☆32Updated 4 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆43Updated 5 months ago
- Detecting natural selection from population-based genetic data☆27Updated 5 years ago
- A program for the Maximum-likelihood analysis of population genomic data.☆28Updated 3 years ago
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆21Updated last year
- Repository for speciation genomics website☆24Updated 5 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆71Updated 3 years ago
- An Efficient Swiss Army Knife for Population Genomic Analyses in R☆33Updated 7 months ago
- Software for ancestry estimation in unrelated individuals☆15Updated this week
- A statistical framework for ploidy estimation using NGS short-read data☆55Updated 6 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated last year
- Software for estimating genome-wide genealogies for thousands of samples☆29Updated 3 months ago
- Implementation of the multiple sequential markovian coalescent☆87Updated last year
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆48Updated this week
- ☆27Updated 2 years ago
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆46Updated last year
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated 9 months ago
- kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.☆31Updated 9 months ago
- Presentations from the course☆36Updated last year
- A set of functions to visualise genotypes based on a VCF☆85Updated 2 years ago
- Population genetic simulations in R 🌍☆55Updated 2 weeks ago
- Tutorial about R package PopGenome☆41Updated 5 years ago
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆35Updated 8 months ago
- ☆56Updated 2 years ago