ginolhac / mapDamage
mapDamage: tracking and quantifying damage patterns in ancient DNA sequences
☆43Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for mapDamage
- Pipelines and tools for the processing of ancient and modern HTS data.☆43Updated 3 months ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆31Updated last year
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆67Updated 3 years ago
- Pinpoints the mutation favored by selection☆32Updated 3 years ago
- Interim data for the Darwin Tree of Life Project☆32Updated 4 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆24Updated 6 years ago
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆45Updated 11 months ago
- A program for the Maximum-likelihood analysis of population genomic data.☆28Updated 3 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆53Updated last week
- Estimate recombination rates from population genetic data☆59Updated 4 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆47Updated 2 months ago
- Short scripts for converting genetic data between formats.☆29Updated 2 years ago
- ☆42Updated 11 months ago
- Automated de novo assembly of whole chloroplast genomes.☆44Updated last month
- Implementation of the multiple sequential markovian coalescent☆86Updated last year
- Pipeline to take VCF through to Selection Analysis.☆58Updated last year
- Scripts to calculate population genetics statistics☆53Updated 6 years ago
- Methods for examining PCA locally along the genome.☆71Updated 2 months ago
- De novo annotation of young retrotransposons☆46Updated 2 years ago
- Evolutionary Transcriptomics with R☆41Updated last week
- adds sample names and read-group (RG) tags to BAM alignments☆52Updated 3 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆52Updated this week
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆21Updated last year
- Materials for Spring 2021 Applied Genomics Course☆52Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 4 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 2 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆92Updated 8 years ago
- Tools and Utilities for msmc and msmc2☆46Updated last year
- An Efficient Swiss Army Knife for Population Genomic Analyses in R☆31Updated 5 months ago