nf-core / eagerLinks
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
☆193Updated last month
Alternatives and similar repositories for eager
Users that are interested in eager are comparing it to the libraries listed below
Sorting:
- Long read production pipelines☆151Updated this week
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆167Updated 2 years ago
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆222Updated this week
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆169Updated 8 months ago
- Quality control for MinION sequencing data☆217Updated 2 years ago
- Hierarchical Alignment Format☆174Updated 3 weeks ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆289Updated 3 weeks ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆145Updated 5 months ago
- Jasmine: SV Merging Across Samples☆235Updated last year
- Nanopore demultiplexing, QC and alignment pipeline☆218Updated last month
- Test data to be used for automated testing with the nf-core pipelines☆150Updated this week
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆111Updated 6 months ago
- A library for running k-mers based GWAS☆123Updated last year
- Tools for plotting methylation data in various ways☆166Updated last month
- Pipeline to fetch metadata and raw FastQ files from public databases☆184Updated last month
- VGP repository for the genome assembly working group☆194Updated 7 months ago
- Assembly and intrahost/low-frequency variant calling for viral samples☆151Updated last month
- structural variant calling and genotyping with existing tools, but, smoothly.☆261Updated last year
- Genome Assembly and Annotation Service code☆217Updated 2 years ago
- An overview of all nanopack tools☆274Updated 2 years ago
- De-Novo Repeat Discovery Tool☆229Updated 5 months ago
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆241Updated last year
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆143Updated 5 months ago
- Read trimming tool for Illumina NGS data.☆148Updated 10 years ago
- Population-scale genotyping using pangenome graphs☆195Updated 11 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆188Updated last year
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- Create statistic summary of an Oxford Nanopore read dataset☆128Updated 3 years ago
- Fast genome analysis from unassembled short reads☆305Updated last year
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆163Updated last week