nf-core / eagerLinks
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
☆197Updated last week
Alternatives and similar repositories for eager
Users that are interested in eager are comparing it to the libraries listed below
Sorting:
- Assembly and intrahost/low-frequency variant calling for viral samples☆154Updated last week
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆143Updated 6 months ago
- Quality control for MinION sequencing data☆216Updated 3 years ago
- Pipeline to fetch metadata and raw FastQ files from public databases☆186Updated last week
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆171Updated 2 years ago
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆112Updated 7 months ago
- Hierarchical Alignment Format☆174Updated last week
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆176Updated this week
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- Nanopore demultiplexing, QC and alignment pipeline☆217Updated 2 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆255Updated 6 months ago
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆228Updated last week
- Assembly and binning of metagenomes☆269Updated last week
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆168Updated 9 months ago
- Finds SNP sites from a multi-FASTA alignment file☆272Updated 5 years ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆190Updated last week
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆243Updated 2 years ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆178Updated 2 years ago
- a signal-level demultiplexer for Oxford Nanopore reads☆126Updated 5 years ago
- Tools for plotting methylation data in various ways☆168Updated 2 months ago
- Long read production pipelines☆151Updated this week
- Read trimming tool for Illumina NGS data.☆149Updated 10 years ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Updated last year
- Jasmine: SV Merging Across Samples☆237Updated last year
- Genome Assembly and Annotation Service code☆217Updated 2 years ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆207Updated last year
- Tool to plot synteny and structural rearrangements between genomes☆337Updated 9 months ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆120Updated 2 years ago
- ☆231Updated last year
- Create statistic summary of an Oxford Nanopore read dataset☆131Updated 3 years ago