Alternatives and similar repositories for eager

Users that are interested in eager are comparing it to the libraries listed below

• nf-core / viralrecon
  Assembly and intrahost/low-frequency variant calling for viral samples
  ☆143Updated last week
• nf-core / taxprofiler
  Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
  ☆161Updated this week
• roblanf / minion_qc
  Quality control for MinION sequencing data
  ☆216Updated 2 years ago
• timkahlke / LongRead_tutorials
  Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
  ☆142Updated 2 months ago
• nanoporetech / pipeline-transcriptome-de
  Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
  ☆108Updated 2 years ago
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆158Updated 2 years ago
• nf-core / test-datasets
  Test data to be used for automated testing with the nf-core pipelines
  ☆139Updated this week
• moiexpositoalonsolab / grenepipe
  A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…
  ☆106Updated 2 months ago
• KamilSJaron / smudgeplot
  Inference of ploidy and heterozygosity structure using whole genome sequencing data
  ☆277Updated 2 weeks ago
• ComparativeGenomicsToolkit / hal
  Hierarchical Alignment Format
  ☆171Updated 2 weeks ago
• Gabaldonlab / redundans
  Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
  ☆157Updated 5 months ago
• nf-core / fetchngs
  Pipeline to fetch metadata and raw FastQ files from public databases
  ☆180Updated 2 months ago
• biocorecrg / master_of_pores
  Nextflow pipeline for analysis of direct RNA Nanopore reads
  ☆107Updated 3 months ago
• rrwick / Deepbinner
  a signal-level demultiplexer for Oxford Nanopore reads
  ☆126Updated 4 years ago
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆172Updated last year
• nf-core / nanoseq
  Nanopore demultiplexing, QC and alignment pipeline
  ☆211Updated 2 months ago
• MariaNattestad / Assemblytics
  Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…
  ☆145Updated 2 months ago
• tseemann / snp-dists
  Pairwise SNP distance matrix from a FASTA sequence alignment
  ☆141Updated last year
• adamewing / methylartist
  Tools for plotting methylation data in various ways
  ☆160Updated last month
• broadinstitute / long-read-pipelines
  Long read production pipelines
  ☆148Updated last week
• epi2me-labs / wf-metagenomics
  Metagenomic classification of long-read sequencing data
  ☆94Updated last week
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆225Updated 9 months ago
• wdecoster / nanostat
  Create statistic summary of an Oxford Nanopore read dataset
  ☆123Updated 2 years ago
• DRL / blobtools
  Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
  ☆204Updated last year
• cgroza / GraffiTE
  GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …
  ☆198Updated 3 months ago
• wdecoster / nanocomp
  Comparison of multiple long read datasets
  ☆142Updated 2 weeks ago
• sanger-pathogens / circlator
  A tool to circularize genome assemblies
  ☆247Updated last year
• fbreitwieser / krakenuniq
  🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results
  ☆239Updated last year
• NBISweden / GAAS
  Genome Assembly and Annotation Service code
  ☆214Updated last year
• Dfam-consortium / RepeatMasker
  RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
  ☆272Updated last week