Alternatives and similar repositories for smtpred:

Users that are interested in smtpred are comparing it to the libraries listed below

• myles-lewis / locuszoomr
  A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.
  ☆41Updated 3 weeks ago
• cgrace1978 / manhplot
  Manhattan++
  ☆28Updated last year
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆44Updated last year
• precimed / python_convert
  A collection of various utilities for GWAS summary statistics
  ☆27Updated 10 months ago
• anastasia-lucas / hudson
  An R package for creating mirrored Manhattan plots
  ☆18Updated 2 years ago
• psoerensen / qgg
  Statistical tools for Quantitative Genetic Analyses
  ☆36Updated last week
• omerwe / S-PCGC
  Heritability, genetic correlation and functional enrichment estimation for case-control studies
  ☆19Updated last year
• juliedwhite / miamiplot
  An R package for creating ggplot2 based miami plots.
  ☆16Updated 3 weeks ago
• yiminghu / post-GWAS-pipeline
  A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data
  ☆28Updated 2 years ago
• getian107 / SuSiEx
  Cross-population fine-mapping
  ☆34Updated 3 months ago
• thewonlab / H-MAGMA
  ☆32Updated last year
• astheeggeggs / UKBB_ldsc_r2
  genetic correlation between phenotypes in the UK biobank
  ☆12Updated last year
• carlaml / LDpred-funct
  Here we develop the software for the method LDpredfunct described in https://www.biorxiv.org/content/early/2018/07/24/375337
  ☆17Updated 7 months ago
• Jeremy37 / AD_finemap
  Code supporting analyses in paper on fine-mapping AD loci
  ☆15Updated 3 years ago
• RitchieLab / GWAS-QC
  Quality control steps for GWAS
  ☆19Updated last year
• n-mounier / bGWAS
  R package to perform Bayesian Genome-Wide Association Studies
  ☆39Updated last year
• yanglab-emory / TIGAR
  ☆21Updated 4 months ago
• bhattacharya-a-bt / isotwas
  ☆21Updated 2 months ago
• qlu-lab / X-Wing
  Cross-population weighting framework to improve genetic risk prediction in ancestrally diverse populations
  ☆15Updated 7 months ago
• bogdanlab / fizi
  Leveraging functional information to improve GWAS summary statistic imputation
  ☆20Updated 3 years ago
• RajLabMSSM / ggLocusZoom
  Create LocusZoom-style plots in R.
  ☆21Updated 2 years ago
• ilarsf / gwasTools
  Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)
  ☆30Updated last year
• YinLiLin / SumTool
  Tool for GWAS summary-level data analysis
  ☆26Updated 4 years ago
• saralpulit / gwas-scripts
  A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…
  ☆20Updated 7 years ago
• bvoightlab / ColocQuiaL
  Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.
  ☆18Updated 2 years ago
• Marijn-Schipper / FLAMES
  FLAMES: Accurate gene prioritization in GWAS loci
  ☆31Updated 3 weeks ago
• kjgleason / Primo
  Primo
  ☆16Updated 3 years ago
• kaustubhad / fastman
  An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.
  ☆37Updated 3 months ago
• xqwen / torus
  QTL Discovery using Annotations
  ☆24Updated 2 years ago
• LaurenceHowe / SiblingGWAS
  Scripts for running a sibling GWAS
  ☆15Updated 3 years ago