Alternatives and similar repositories for smtpred

Users that are interested in smtpred are comparing it to the libraries listed below

• myles-lewis / locuszoomr
  A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.
  ☆50Updated 7 months ago
• n-mounier / bGWAS
  R package to perform Bayesian Genome-Wide Association Studies
  ☆41Updated 2 years ago
• psoerensen / qgg
  Statistical tools for Quantitative Genetic Analyses
  ☆38Updated 2 months ago
• RajLabMSSM / ggLocusZoom
  Create LocusZoom-style plots in R.
  ☆22Updated 2 years ago
• bhattacharya-a-bt / isotwas
  ☆23Updated 3 months ago
• bvoightlab / ColocQuiaL
  Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.
  ☆20Updated 2 months ago
• yiminghu / post-GWAS-pipeline
  A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data
  ☆29Updated 3 years ago
• ilarsf / gwasTools
  Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)
  ☆32Updated 4 months ago
• getian107 / SuSiEx
  Cross-population fine-mapping
  ☆38Updated 10 months ago
• jinghuazhao / FM-pipeline
  A Fine-Mapping pipeline
  ☆21Updated 6 years ago
• adhikari-statgen-lab / fastman
  An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.
  ☆39Updated last month
• cgrace1978 / manhplot
  Manhattan++
  ☆28Updated last year
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆46Updated 2 years ago
• juliedwhite / miamiplot
  An R package for creating ggplot2 based miami plots.
  ☆18Updated 7 months ago
• hakyimlab / PredictDBPipeline
  ☆16Updated 4 years ago
• Jeremy37 / AD_finemap
  Code supporting analyses in paper on fine-mapping AD loci
  ☆16Updated 4 years ago
• dgarrimar / manta
  Non-parametric, asymptotic P-value computation for multivariate linear models
  ☆15Updated 2 years ago
• saralpulit / gwas-scripts
  A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…
  ☆20Updated 8 years ago
• GP2code / GP2-Multiancestry-metaGWAS
  ☆12Updated 2 years ago
• hanchenphd / GMMAT
  Generalized linear Mixed Model Association Tests
  ☆44Updated last year
• pgxcentre / region-plot
  A tool to plot significant regions of GWAS
  ☆29Updated 2 years ago
• FinucaneLab / fine-mapping-inf
  Fine-mapping with infinitesimal effects
  ☆20Updated 5 months ago
• borangao / MESuSiE
  ☆20Updated 3 months ago
• RitchieLab / GWAS-QC
  Quality control steps for GWAS
  ☆25Updated 2 years ago
• Geeketics / LocusZooms
  Make LocusZoom-like plots with your own LD matrix.
  ☆47Updated 3 years ago
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆34Updated 5 years ago
• Nealelab / whole_genome_analysis_pipeline
  ☆20Updated 2 years ago
• jrs95 / geni.plots
  GENI plots to visualise results from genome-wide association studies
  ☆30Updated last year
• yanglab-emory / TIGAR
  ☆22Updated last month
• KeinanLab / xwas-3.0
  A Toolset for Chromosome X-Wide Association Studies
  ☆12Updated 7 years ago