SMTpred is a program which combines SNP effects or individual scores from multiple traits according to their sample size, SNP-heritability (h2) and genetic correlation (rG), in order to create more accurate polygenic risk scores.
☆15May 25, 2017Updated 8 years ago
Alternatives and similar repositories for smtpred
Users that are interested in smtpred are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An statistical approach leveraging segments of distinct ancestries within individuals to estimate similarity in underlying causal effect …☆13Sep 27, 2024Updated last year
- metaUSAT is a data-adaptive statistical approach for testing genetic associations of multiple traits from single/multiple studies using u…☆21May 27, 2021Updated 4 years ago
- Instructions and helpful R code for Running GEMMA and GAPIT☆13Sep 14, 2017Updated 8 years ago
- ☆25Jan 8, 2026Updated 2 months ago
- A protocol to estimate global ancestry starting from raw Illumina data☆11Oct 16, 2019Updated 6 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Analyses conducting GWAS across the UKBB diverse superpopulations☆64Oct 22, 2025Updated 5 months ago
- Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.☆21Aug 19, 2025Updated 7 months ago
- ☆11May 10, 2025Updated 10 months ago
- Fine-tuning polygenic risk score models using GWAS summary statistics☆54Oct 19, 2025Updated 5 months ago
- Debiased Inverse-Variance Weighted Estimator in Two-Sample Summary-Data Mendelian Randomization☆10Nov 19, 2025Updated 4 months ago
- ☆21Aug 2, 2025Updated 7 months ago
- ☆13Apr 30, 2019Updated 6 years ago
- ☆18Oct 23, 2025Updated 5 months ago
- We have moved to https://github.com/limix/limix.☆23Aug 29, 2017Updated 8 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Analysis pipelines for QTL discovery and GWAS signals interpretation☆12Sep 3, 2024Updated last year
- A small C and Python library for reading PLINK genotype files.☆51Nov 27, 2024Updated last year
- Here we develop the software for the method LDpredfunct described in https://www.biorxiv.org/content/early/2018/07/24/375337☆18Aug 30, 2024Updated last year
- ggplot2-based Manhattan plot☆12Oct 18, 2022Updated 3 years ago
- An efficient genetic data imputation pipeline☆12Apr 7, 2022Updated 3 years ago
- Contains data files that are referenced in R tutorials from the following YouTube playlist: https://www.youtube.com/playlist?list=PLKkRkU…☆24May 12, 2024Updated last year
- The SPrime program identifies variants that are introgressed from archaic populations.☆27May 21, 2022Updated 3 years ago
- DENTIST (Detecting Errors iN analyses of summary staTISTics) is a QC tool for summary-data-based analyses.☆28Oct 5, 2023Updated 2 years ago
- The gsmr R-package implements the GSMR (Generalised Summary-data-based Mendelian Randomisation) method that uses GWAS summary statistics …☆20Apr 26, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- AncestralClust