stschiff / sequenceTools
☆41Updated this week
Related projects ⓘ
Alternatives and complementary repositories for sequenceTools
- Method for dating admixture in ancient DNA specimens☆26Updated 2 years ago
- Maximum a posteriori estimate of contamination for ancient samples☆20Updated 3 weeks ago
- Implementation of the multiple sequential markovian coalescent☆87Updated last year
- ☆42Updated 11 months ago
- Presentations from the course☆36Updated last year
- ☆53Updated last year
- Workflow for processing Illumina sequencing runs for ancient human DNA☆18Updated 4 years ago
- FFT cross-correlation based synteny aligner, (re)designed to make full use of parallel computing☆41Updated 2 years ago
- Software to call ROHs☆15Updated last week
- Pipelines and tools for the processing of ancient and modern HTS data.☆43Updated 3 months ago
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆45Updated last year
- mapDamage: tracking and quantifying damage patterns in ancient DNA sequences☆43Updated 2 months ago
- Automated de novo assembly of whole chloroplast genomes.☆44Updated last month
- A toolkit for annotation of transposable element families from unassembled sequence reads☆31Updated last year
- The hap-ibd program detects identity-by-descent segments in phased genotype data.☆43Updated 5 months ago
- ☆75Updated 2 weeks ago
- This package contains Perl programs/scripts that perform frequently needed operations on FASTA format files.☆16Updated 11 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆68Updated 3 years ago
- Scripts and notes on how to analyse ancient DNA genotype data to understand population structure☆30Updated last year
- Detecting natural selection from population-based genetic data☆27Updated 5 years ago
- Methods for examining PCA locally along the genome.☆71Updated 3 months ago
- Posterior summarisation in Bayesian phylogenetics☆55Updated 2 months ago
- A workflow for integrating ancient lineages into present-day phylogenies.☆24Updated 2 months ago
- Pinpoints the mutation favored by selection☆32Updated 3 years ago
- ☆18Updated 10 months ago
- Tools and Utilities for msmc and msmc2☆46Updated last year
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆24Updated 6 years ago
- ☆18Updated 3 years ago
- software for UCE (and general) phylogenomics☆80Updated 2 weeks ago
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆73Updated 11 months ago