stschiff / sequenceTools
☆45Updated this week
Alternatives and similar repositories for sequenceTools:
Users that are interested in sequenceTools are comparing it to the libraries listed below
- Method for dating admixture in ancient DNA specimens☆26Updated 3 years ago
- Maximum a posteriori estimate of contamination for ancient samples☆21Updated 5 months ago
- Implementation of the multiple sequential markovian coalescent☆87Updated last year
- Workflow for processing Illumina sequencing runs for ancient human DNA☆20Updated 4 years ago
- Software to call ROHs☆16Updated 3 months ago
- ☆43Updated last week
- ☆78Updated last month
- ☆57Updated 2 years ago
- This is a tool to estimate pairwise relatedness from ancient DNA, taking in account contamination, ROH, ascertainment bias.☆9Updated 7 months ago
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆57Updated 4 months ago
- A workflow for integrating ancient lineages into present-day phylogenies.☆24Updated 6 months ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- An R script to generate plots for ADMIXTURE runs, for multiple K values.☆18Updated last month
- Scripts and notes on how to analyse ancient DNA genotype data to understand population structure☆32Updated last year
- Short scripts for converting genetic data between formats.☆29Updated 2 years ago
- Pipeline to take VCF through to Selection Analysis.☆58Updated 2 years ago
- Pinpoints the mutation favored by selection☆33Updated 3 years ago
- The hap-ibd program detects identity-by-descent segments in phased genotype data.☆47Updated 9 months ago
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆46Updated last year
- Presentations from the course☆36Updated last year
- Methods for examining PCA locally along the genome.☆77Updated 7 months ago
- gargammel is an ancient DNA simulator☆27Updated 8 months ago
- mapDamage: tracking and quantifying damage patterns in ancient DNA sequences☆44Updated 6 months ago
- ☆12Updated last year
- An aDNA aware short-read mapper☆19Updated last week
- ☆18Updated last year
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- A set of functions to visualise genotypes based on a VCF☆85Updated 3 years ago
- A pipeline that accepts a VCF file to run through Admixture☆59Updated 2 months ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆49Updated 2 months ago