stschiff / sequenceToolsLinks
☆51Updated last week
Alternatives and similar repositories for sequenceTools
Users that are interested in sequenceTools are comparing it to the libraries listed below
Sorting:
- Method for dating admixture in ancient DNA specimens☆28Updated 4 years ago
- Implementation of the multiple sequential markovian coalescent☆90Updated 6 months ago
- Maximum a posteriori estimate of contamination for ancient samples☆23Updated 3 months ago
- Workflow for processing Illumina sequencing runs for ancient human DNA☆25Updated 5 years ago
- A workflow for integrating ancient lineages into present-day phylogenies.☆31Updated 6 months ago
- ☆66Updated 3 years ago
- ☆46Updated 10 months ago
- ☆95Updated 8 months ago
- mapDamage: tracking and quantifying damage patterns in ancient DNA sequences☆47Updated 6 months ago
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆47Updated 2 years ago
- An R interface for the ADMIXTOOLS software☆34Updated 2 months ago
- The flare program performs local ancestry inference☆45Updated 3 months ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆48Updated last week
- Estimate recombination rates from population genetic data☆71Updated 5 years ago
- Detecting natural selection from population-based genetic data☆28Updated 6 years ago
- software for UCE (and general) phylogenomics☆87Updated 2 months ago
- Pinpoints the mutation favored by selection☆34Updated 4 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆58Updated 7 months ago
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆73Updated 10 months ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆44Updated 6 years ago
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆66Updated 2 weeks ago
- GONE: Scripts, programs and an example data set☆51Updated 6 months ago
- Methods for examining PCA locally along the genome.☆88Updated last year
- Infer demographic history with the Moran model☆51Updated 7 months ago
- ☆21Updated 2 years ago
- A statistical framework for ploidy estimation using NGS short-read data☆62Updated 7 years ago
- The hap-ibd program detects identity-by-descent segments in phased genotype data.☆53Updated last year
- Pipeline to take VCF through to Selection Analysis.☆58Updated 3 years ago
- mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.☆88Updated 4 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆77Updated 4 years ago