hringbauer / hapROHLinks
Software to call ROHs
☆16Updated last month
Alternatives and similar repositories for hapROH
Users that are interested in hapROH are comparing it to the libraries listed below
Sorting:
- Workflow for processing Illumina sequencing runs for ancient human DNA☆21Updated 4 years ago
- EM-PCA for Ultra-low Coverage Sequencing Data☆18Updated 4 months ago
- This is a tool to estimate pairwise relatedness from ancient DNA, taking in account contamination, ROH, ascertainment bias.☆9Updated 10 months ago
- ☆12Updated last year
- An R script to generate plots for ADMIXTURE runs, for multiple K values.☆19Updated 3 months ago
- Method for dating admixture in ancient DNA specimens☆27Updated 3 years ago
- ☆43Updated 2 months ago
- ☆20Updated last year
- Two locus likelihoods and ARGs under changing population size☆14Updated 2 months ago
- Experimental EIGENSOFT performance improvements.☆22Updated 10 years ago
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆61Updated this week
- Module for analysing admixture graphs☆28Updated 7 years ago
- R-package: Calculation of haplotype blocks and libraries☆30Updated 3 months ago
- Mixed Model Package For Genome-wide association mapping.☆17Updated 6 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- ☆30Updated this week
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…☆38Updated last year
- SEEKIN: SEquence-based Estimation of KINship☆14Updated 7 years ago
- BITE: BioInformatics tools for everyone☆21Updated 10 months ago
- An R package for reproducible and automated ADMIXTOOLS analyses☆32Updated 3 months ago
- Suite of tools for pangenomics built using vg☆22Updated last month
- Analysis of inference methods on standard population models☆25Updated 3 years ago
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆15Updated 2 years ago
- Sweep Inference Framework (controlling for correlation)☆29Updated 10 months ago
- an R package for admixture analyses☆17Updated 10 years ago
- Work for the tree sequence inference paper.☆23Updated 4 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- A guide to manipulating genotypic data across the common formats: VCF, EIGENSTRAT and PLINK (PACKEDPED) files. Includes how to convert be…☆20Updated last year
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆47Updated last year