hringbauer / hapROHLinks
Software to call ROHs
☆16Updated 4 months ago
Alternatives and similar repositories for hapROH
Users that are interested in hapROH are comparing it to the libraries listed below
Sorting:
- This is a tool to estimate pairwise relatedness from ancient DNA, taking in account contamination, ROH, ascertainment bias.☆10Updated last year
- SEEKIN: SEquence-based Estimation of KINship☆14Updated 7 years ago
- An R script to generate plots for ADMIXTURE runs, for multiple K values.☆19Updated 6 months ago
- Analysis of inference methods on standard population models☆25Updated 3 years ago
- ☆20Updated last year
- EM-PCA for Ultra-low Coverage Sequencing Data☆18Updated 7 months ago
- Workflow for processing Illumina sequencing runs for ancient human DNA☆23Updated 4 years ago
- Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…☆38Updated last year
- ☆12Updated last year
- Experimental EIGENSOFT performance improvements.☆21Updated 10 years ago
- An R package for reproducible and automated ADMIXTOOLS analyses☆33Updated 6 months ago
- ☆43Updated 5 months ago
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆65Updated last month
- ☆30Updated this week
- Module for analysing admixture graphs☆28Updated 7 years ago
- Coprolite host Identification pipeline☆13Updated last month
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆15Updated 2 years ago
- Tao Yan's Plot Toolkit☆12Updated 6 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 4 months ago
- Method for dating admixture in ancient DNA specimens☆28Updated 3 years ago
- Performing highly efficient genome scans for local adaptation with R package pcadapt v4☆42Updated last month
- Single-header C++ library for fast/low-memory VCF (Variant Call Format) parsing.☆17Updated this week
- Repository for pipeline code☆26Updated last year
- ☆11Updated 3 years ago
- The flare program performs local ancestry inference☆40Updated last month
- an R package for admixture analyses☆17Updated 10 years ago
- ☆16Updated 2 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- Inference of population structure from time-series genotype data☆13Updated 6 years ago
- Evolutionary Transcriptomics with R☆45Updated this week