Software to call ROHs
☆20Apr 9, 2026Updated 2 months ago
Alternatives and similar repositories for hapROH
Users that are interested in hapROH are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Oct 19, 2023Updated 2 years ago
- ☆52May 12, 2026Updated last month
- The Poseidon Community Archive (PCA). Download from here: https://server.poseidon-adna.org/explorer/community-archive NOT through the G…☆15Updated this week
- An aDNA aware short-read mapper☆22Apr 22, 2026Updated 2 months ago
- This is a tool to estimate pairwise relatedness from ancient DNA, taking in account contamination, ROH, ascertainment bias.☆17Aug 6, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Workflow for processing Illumina sequencing runs for ancient human DNA☆27Oct 29, 2020Updated 5 years ago
- gargammel is an ancient DNA simulator☆39Jul 22, 2024Updated last year
- Compute postmortem damage patterns and decontaminate ancient genomes☆22Apr 20, 2021Updated 5 years ago
- Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.☆13Jun 3, 2025Updated last year
- ☆23Mar 27, 2026Updated 3 months ago
- Inference of population structure from time-series genotype data☆15Jul 9, 2019Updated 6 years ago
- Experimental EIGENSOFT performance improvements.☆21Nov 1, 2014Updated 11 years ago
- Maximum a posteriori estimate of contamination for ancient samples☆24Nov 4, 2025Updated 7 months ago
- Simulate spatial data☆27May 26, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- This book summarises prepared mini-courses for various computational tools and methods in the field of human archaeogenetic data analysis…☆17Apr 14, 2026Updated 2 months ago
- Processing WGS aDNA data using the ReichLab protocol☆13Mar 8, 2019Updated 7 years ago
- A workflow for integrating ancient lineages into present-day phylogenies.☆32Jul 7, 2025Updated 11 months ago
- ☆19Sep 20, 2021Updated 4 years ago
- ☆48Updated this week
- ☆17Oct 17, 2024Updated last year
- ☆23Jun 9, 2021Updated 5 years ago
- This workshop, organised on behalf of the CAA-SIG "Scientific Scripting Languages in Archaeology", offers a low-level introduction to R p…☆22Jun 19, 2021Updated 5 years ago
- R functions related to pedigrees☆14Sep 29, 2025Updated 9 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A fully reproducible and state-of-the-art ancient DNA analysis pipeline☆208Jun 24, 2026Updated last week
- a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.☆25Jun 7, 2026Updated 3 weeks ago
- An assistive shiny application toolkit built for scaling and standardizing application development☆18Jan 29, 2025Updated last year
- Method for dating admixture in ancient DNA specimens☆33Jan 12, 2022Updated 4 years ago
- R Package - Spatiotemporal Data Interpolation and Visualisation based on 3D Tessellation☆15Sep 15, 2021Updated 4 years ago
- ☆11Dec 1, 2020Updated 5 years ago
- LD Score Regression (LDSC)☆16Dec 16, 2024Updated last year
- Tools test whether admixture occurred and more☆230May 5, 2026Updated last month
- Plasmid and antimicrobial resistance pipeline☆16Apr 30, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- mapping pipeline for ancient DNA☆35Feb 20, 2026Updated 4 months ago
- source of chrome extension "the paper link - tpl" for PubMed☆20Feb 26, 2026Updated 4 months ago
- ☆15Mar 13, 2026Updated 3 months ago
- software for the MAPS method☆25Mar 20, 2019Updated 7 years ago
- ☆99Jun 24, 2026Updated last week
- A simple tool to calculate metrics from a BAM file and filter references with uneven coverages☆22Apr 24, 2026Updated 2 months ago
- Experimental String Graph construction and processing☆25Aug 14, 2023Updated 2 years ago