Software to call ROHs
☆21Aug 26, 2026Updated 2 months ago
Alternatives and similar repositories for hapROH
Users that are interested in hapROH are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Oct 19, 2023Updated 3 years ago
- This is a tool to estimate pairwise relatedness from ancient DNA, taking in account contamination, ROH, ascertainment bias.☆16Aug 6, 2024Updated 2 years ago
- The Poseidon Community Archive (PCA). Download from here: https://server.poseidon-adna.org/explorer/community-archive NOT through the G…☆18Oct 12, 2026Updated 2 weeks ago
- This book summarises prepared mini-courses for various computational tools and methods in the field of human archaeogenetic data analysis…☆17Oct 14, 2026Updated 2 weeks ago
- ☆52May 12, 2026Updated 5 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- An aDNA aware short-read mapper☆22Apr 22, 2026Updated 6 months ago
- Processing WGS aDNA data using the ReichLab protocol☆13Mar 8, 2019Updated 7 years ago
- Method for dating admixture in ancient DNA specimens☆34Jan 12, 2022Updated 4 years ago
- Workflow for processing Illumina sequencing runs for ancient human DNA☆28Oct 29, 2020Updated 6 years ago
- ☆50Jun 26, 2026Updated 4 months ago
- Compute postmortem damage patterns and decontaminate ancient genomes☆23Apr 20, 2021Updated 5 years ago
- A fully reproducible and state-of-the-art ancient DNA analysis pipeline☆213Updated this week
- Inference of population structure from time-series genotype data☆15Jul 9, 2019Updated 7 years ago
- An R script to generate plots for ADMIXTURE runs, for multiple K values.☆19Feb 27, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.☆14Oct 7, 2026Updated 3 weeks ago
- ☆17Oct 17, 2024Updated 2 years ago
- Code to do data processing and create figures for "The geography of recent genetic ancestry across Europe", http://arxiv.org/abs/1207.381…☆15May 26, 2014Updated 12 years ago
- Experimental EIGENSOFT performance improvements.☆22Nov 1, 2014Updated 11 years ago
- Haplotype-based inference of recent effective population size in modern and ancient DNA samples☆14Apr 4, 2025Updated last year
- ☆12Aug 20, 2025Updated last year
- Maximum a posteriori estimate of contamination for ancient samples☆26Sep 28, 2026Updated last month
- ☆105Jun 28, 2026Updated 4 months ago
- gargammel is an ancient DNA simulator☆39Sep 25, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Transcript specific RNA splicing events lookup☆10Jun 22, 2026Updated 4 months ago
- R front-end for TASSEL 5☆35Oct 21, 2026Updated last week
- Program for analysing NGS data.☆269Oct 22, 2026Updated last week
- Structural variant VCF annotation, filtering, duplicate removal and comparison☆38Sep 3, 2026Updated last month
- a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.☆28Jun 7, 2026Updated 4 months ago
- ☆10Jun 9, 2020Updated 6 years ago
- Experimental String Graph construction and processing☆25Aug 14, 2023Updated 3 years ago
- Simulate spatial data☆27May 26, 2026Updated 5 months ago
- A workflow for integrating ancient lineages into present-day phylogenies.☆32Jul 24, 2026Updated 3 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated last year
- This workshop, organised on behalf of the CAA-SIG "Scientific Scripting Languages in Archaeology", offers a low-level introduction to R p…☆22Jun 19, 2021Updated 5 years ago
- Fast algorithms for computing XX^T for binary matrices☆14Sep 24, 2019Updated 7 years ago
- Centromere sequence analysis using rare k-mer markers☆12Jun 26, 2026Updated 4 months ago
- H2M is a Python pipeline for precise modeling of human variants in the mouse genome.☆15Oct 9, 2026Updated 3 weeks ago
- ☆26Mar 27, 2026Updated 7 months ago
- R implementation of integration metrics for single-cell data☆14Sep 23, 2026Updated last month