Software to call ROHs
☆20Aug 10, 2026Updated this week
Alternatives and similar repositories for hapROH
Users that are interested in hapROH are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Oct 19, 2023Updated 2 years ago
- This is a tool to estimate pairwise relatedness from ancient DNA, taking in account contamination, ROH, ascertainment bias.☆17Aug 6, 2024Updated 2 years ago
- The Poseidon Community Archive (PCA). Download from here: https://server.poseidon-adna.org/explorer/community-archive NOT through the G…☆17Jul 17, 2026Updated 3 weeks ago
- This book summarises prepared mini-courses for various computational tools and methods in the field of human archaeogenetic data analysis…☆17Jul 17, 2026Updated 3 weeks ago
- ☆53May 12, 2026Updated 2 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- An aDNA aware short-read mapper☆22Apr 22, 2026Updated 3 months ago
- Workflow for processing Illumina sequencing runs for ancient human DNA☆28Oct 29, 2020Updated 5 years ago
- Compute postmortem damage patterns and decontaminate ancient genomes☆23Apr 20, 2021Updated 5 years ago
- Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.☆13Jul 28, 2026Updated 2 weeks ago
- A fully reproducible and state-of-the-art ancient DNA analysis pipeline☆212Updated this week
- Processing WGS aDNA data using the ReichLab protocol☆13Mar 8, 2019Updated 7 years ago
- An R script to generate plots for ADMIXTURE runs, for multiple K values.☆19Feb 27, 2025Updated last year
- Inference of population structure from time-series genotype data☆15Jul 9, 2019Updated 7 years ago
- Experimental EIGENSOFT performance improvements.☆21Nov 1, 2014Updated 11 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Maximum a posteriori estimate of contamination for ancient samples☆25Updated this week
- ☆100Jun 28, 2026Updated last month
- Simulate spatial data☆27May 26, 2026Updated 2 months ago
- Code to do data processing and create figures for "The geography of recent genetic ancestry across Europe", http://arxiv.org/abs/1207.381…☆15May 26, 2014Updated 12 years ago
- gargammel is an ancient DNA simulator☆39Updated this week
- A workflow for integrating ancient lineages into present-day phylogenies.☆32Jul 24, 2026Updated 2 weeks ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 9 months ago
- ☆20Sep 20, 2021Updated 4 years ago
- ☆50Jun 26, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆25Mar 27, 2026Updated 4 months ago
- This workshop, organised on behalf of the CAA-SIG "Scientific Scripting Languages in Archaeology", offers a low-level introduction to R p…☆22Jun 19, 2021Updated 5 years ago
- ☆12Jun 7, 2024Updated 2 years ago
- ☆17Oct 17, 2024Updated last year
- ☆24Jun 9, 2021Updated 5 years ago
- Code referenced in the manuscript 'The 16S rRNA gene for species and strain-level microbiome analysis'☆11Sep 26, 2019Updated 6 years ago
- a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.☆26Jun 7, 2026Updated 2 months ago
- An assistive shiny application toolkit built for scaling and standardizing application development☆18Jan 29, 2025Updated last year
- Method for dating admixture in ancient DNA specimens☆33Jan 12, 2022Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Structural variant VCF annotation, duplicate removal and comparison☆38Oct 14, 2025Updated 9 months ago
- R Package - Spatiotemporal Data Interpolation and Visualisation based on 3D Tessellation☆15Sep 15, 2021Updated 4 years ago
- ☆15Mar 13, 2026Updated 4 months ago
- An R/Shiny platform for genome-wide SNP analysis and visualization with AI-assisted features☆15May 3, 2026Updated 3 months ago
- ☆12Dec 1, 2020Updated 5 years ago
- Tools test whether admixture occurred and more☆232Jul 13, 2026Updated 3 weeks ago
- Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis☆27Dec 15, 2025Updated 7 months ago