Alternatives and similar repositories for YTree

Users that are interested in YTree are comparing it to the libraries listed below

• LoqLab / yllm
  Yet another LLM command line interface
  ☆16Updated last year
• uqrmaie1 / admixtools
  ☆91Updated 6 months ago
• poseidon-framework / community-archive
  The Poseidon Community Archive (PCA). Download from here: https://server.poseidon-adna.org/explorer/community-archive NOT from GitHub. …
  ☆12Updated last week
• DReichLab / AdmixTools
  Tools test whether admixture occurred and more
  ☆215Updated last year
• MPCMEvolution / MPCMArchive
  Archive of Online Practical Materials for the book of Modern Phylogenetic Comparative Methods (ed. Garamszegi, 2014)
  ☆21Updated 2 years ago
• stschiff / sequenceTools
  ☆50Updated last month
• ruidlpm / pathPhynder
  A workflow for integrating ancient lineages into present-day phylogenies.
  ☆29Updated 5 months ago
• nf-core / eager
  A fully reproducible and state-of-the-art ancient DNA analysis pipeline
  ☆190Updated 3 weeks ago
• Joseph7e / HCGS_Metabarcoding_Tutorials
  Workflow for qiime2 workshop
  ☆13Updated last year
• isaacovercast / easySFS
  Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …
  ☆162Updated last year
• AntonelliLab / seqcap_processor
  Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics
  ☆24Updated 2 years ago
• AI-sandbox / gnomix
  A fast, scalable, and accurate local ancestry method.
  ☆106Updated last week
• dipetkov / eems
  Estimating Effective Migration Surfaces
  ☆109Updated 2 years ago
• popsim-consortium / stdpopsim
  A library of standard population genetic models
  ☆137Updated last week
• jpuritz / dDocent
  a bash pipeline for RAD sequencing
  ☆55Updated 10 months ago
• dereneaton / ipyrad
  Interactive assembly and analysis of RAD-seq data sets
  ☆80Updated last month
• ginolhac / mapDamage
  mapDamage: tracking and quantifying damage patterns in ancient DNA sequences
  ☆47Updated 5 months ago
• sourmash-bio / 2022-search-sra-with-mastiff
  Tools and utilities for making use of mastiff
  ☆12Updated 2 years ago
• sanger-pathogens / snp-sites
  Finds SNP sites from a multi-FASTA alignment file
  ☆269Updated 4 years ago
• VascoElbrecht / JAMP
  JAMP - Just Another Metabarcoding Pipeline
  ☆37Updated 3 years ago
• chaoszhang / ASTER
  Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)
  ☆214Updated 2 weeks ago
• Saskia-Oosterbroek / decona
  fastq to polished sequenses: pipeline suitable for mixed samples and long (Nanopore) reads
  ☆49Updated 2 months ago
• sherrillmix / taxonomizr
  Parse NCBI taxonomy and accessions to find taxonomic assignments
  ☆77Updated 4 months ago
• ghuertaramos / Inat_Images
  Script to download images from inaturalist.org
  ☆28Updated last month
• tobiasgf / lulu
  r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)
  ☆72Updated last year
• chrishah / MITObim
  MITObim - mitochondrial baiting and iterative mapping
  ☆114Updated 4 years ago
• BikLab / BITMaB2-Tutorials
  Workshop materials for the Second Benthic Invertebrates, Metagenomics, and Bioinformatics Workshop at the TAMUCC Harte Institute in Corpu…
  ☆22Updated 7 years ago
• mossmatters / HybPiper
  Recovering genes from targeted sequence capture data
  ☆130Updated 5 months ago
• SPAAM-community / AncientMetagenomeDir
  Repository containing lists of all published ancient metagenomic (and related) samples and libraries
  ☆77Updated this week
• stevenliuyi / admix
  an admixture analysis tool for Python that supports raw data from 23andme, AncestryDNA, etc.
  ☆70Updated 3 years ago