Alternatives and similar repositories for YTree

Users that are interested in YTree are comparing it to the libraries listed below

• LoqLab / yllm
  Yet another LLM command line interface
  ☆16Updated 8 months ago
• wegene-llc / radmixture
  an R package for ancestry analysis
  ☆37Updated 6 years ago
• uqrmaie1 / admixtools
  ☆83Updated 2 months ago
• stevenliuyi / admix
  an admixture analysis tool for Python that supports raw data from 23andme, AncestryDNA, etc.
  ☆68Updated 3 years ago
• 23andMe / yhaplo
  Identifying Y-chromosome haplogroups in arbitrarily large samples of sequenced or genotyped men
  ☆111Updated 3 weeks ago
• plantimals / 2vcf
  convert 23andme or Ancestry.com raw genotype calls into VCF format, with dbSNP annotations
  ☆58Updated 5 years ago
• dipetkov / eems
  Estimating Effective Migration Surfaces
  ☆105Updated last year
• ruidlpm / pathPhynder
  A workflow for integrating ancient lineages into present-day phylogenies.
  ☆29Updated last month
• DReichLab / AdmixTools
  Tools test whether admixture occurred and more
  ☆208Updated 11 months ago
• royfrancis / pophelper
  An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.
  ☆150Updated 2 years ago
• Orion1618 / Odyssey
  Odyssey: A semi-automated pipeline for the prepping, cleaning, phasing, imputing, analyzing, and visualizing genomic data
  ☆19Updated 4 years ago
• stschiff / sequenceTools
  ☆49Updated 3 months ago
• silastittes / shiny_popgen
  Shiny apps for teaching Population Genetics
  ☆65Updated 2 years ago
• poseidon-framework / community-archive
  The Poseidon Community Archive (PCA). Download from here: https://server.poseidon-adna.org/explorer/community-archive NOT from GitHub
  ☆10Updated last week
• TickingClock1992 / RIdeogram
  ☆179Updated 4 years ago
• apriha / snps
  tools for reading, writing, merging, and remapping SNPs
  ☆109Updated 5 months ago
• ginolhac / mapDamage
  mapDamage: tracking and quantifying damage patterns in ancient DNA sequences
  ☆46Updated last month
• nf-core / eager
  A fully reproducible and state-of-the-art ancient DNA analysis pipeline
  ☆179Updated this week
• pgugger / LandscapeGenomics
  Tutorials for bioinformatics and data analysis related to landscape genomics
  ☆29Updated 6 years ago
• grunwaldlab / Population_Genetics_in_R
  A primer for computational tools to analyze genetics of populations in R
  ☆88Updated 4 years ago
• AI-sandbox / gnomix
  A fast, scalable, and accurate local ancestry method.
  ☆101Updated last year
• leospeidel / twigstats
  Time-stratified f-statistics
  ☆14Updated last month
• JTFouquier / ghost-tree
  creating hybrid-gene phylogenetic trees for diversity analyses
  ☆30Updated 3 years ago
• vibansal / crisp
  Code for multi-sample variant calling from sequence data of pooled or unpooled DNA samples
  ☆20Updated 10 months ago
• slowkoni / rfmix
  RFMIX - Local Ancestry and Admixture Inference Version 2
  ☆88Updated 2 years ago
• huiminkang / PIBLUP
  ☆10Updated 7 years ago
• Capblancq / RDA-landscape-genomics
  ☆31Updated 3 years ago
• seppinho / haplogrep-cmd
  HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.
  ☆76Updated 2 years ago
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆83Updated last year
• cwarden45 / DTC_Scripts
  Scripts to Analyze DTC Sequencing and Genotyping Data (and some comparisons to Veritas WGS data)
  ☆20Updated 9 months ago