genid / YleafLinks
Yleaf software for human Y-chromosomal haplogroup inference from next generation sequencing data
☆29Updated 5 months ago
Alternatives and similar repositories for Yleaf
Users that are interested in Yleaf are comparing it to the libraries listed below
Sorting:
- Graph realignment tools for structural variants☆161Updated 2 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆206Updated 2 years ago
- Jasmine: SV Merging Across Samples☆224Updated 8 months ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆158Updated 6 months ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆144Updated last month
- Ultra-fast de novo assembler using long noisy reads☆135Updated 4 years ago
- Whole Genome Simulator for Next-Generation Sequencing☆101Updated 8 months ago
- Structural Variant Identification Method using Long Reads☆173Updated 4 years ago
- A tool for estimating repeat sizes☆197Updated last year
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆238Updated last year
- Generate an interactive dot plot from mummer or minimap alignments☆209Updated last year
- ☆209Updated 3 weeks ago
- A minimap2 frontend for PacBio native data formats☆202Updated 6 months ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆141Updated last month
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆188Updated last year
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 4 years ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆172Updated last year
- The DevNet project on github stores the PacBio DevNet website.☆116Updated 7 years ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆208Updated 2 months ago
- Bayesian genotyper for structural variants☆134Updated 4 years ago
- Tools for processing and analyzing structural variants.☆154Updated 3 years ago
- Hierarchical Alignment Format☆171Updated 8 months ago
- MITObim - mitochondrial baiting and iterative mapping☆113Updated 4 years ago
- ☆216Updated 7 months ago
- Filtering and trimming of long read sequencing data☆208Updated 2 years ago
- ☆157Updated this week
- structural variant calling and genotyping with existing tools, but, smoothly.☆257Updated last year
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆178Updated 10 months ago
- SV caller for nanopore data☆91Updated 5 years ago
- SV detection from paired end reads mapping☆117Updated 6 years ago