Alternatives and similar repositories for Yleaf

Users that are interested in Yleaf are comparing it to the libraries listed below

• genome / breakdancer
  SV detection from paired end reads mapping
  ☆117Updated 5 years ago
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆214Updated 4 months ago
• nh13 / DWGSIM
  Whole Genome Simulator for Next-Generation Sequencing
  ☆97Updated 5 months ago
• hall-lab / svtyper
  Bayesian genotyper for structural variants
  ☆132Updated 4 years ago
• mroosmalen / nanosv
  SV caller for nanopore data
  ☆91Updated 4 years ago
• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆145Updated 2 months ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆97Updated last year
• brentp / duphold
  don't get DUP'ed or DEL'ed by your putative SVs.
  ☆105Updated 4 years ago
• gymreklab / GangSTR
  A tool for profiling long STRs from short reads
  ☆96Updated 4 years ago
• compbiocore / VariantVisualization.jl
  Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:
  ☆86Updated last year
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆126Updated 9 months ago
• eldariont / svim
  Structural Variant Identification Method using Long Reads
  ☆172Updated 3 years ago
• genome-in-a-bottle / giab_latest_release
  This repository contains information about latest release from Genome in a Bottle project
  ☆74Updated 5 years ago
• Griffan / VerifyBamID
  VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
  ☆97Updated 11 months ago
• AstraZeneca-NGS / VarDict
  VarDict
  ☆199Updated last year
• dkoboldt / varscan
  Variant calling and somatic mutation/CNV detection for next-generation sequencing data
  ☆158Updated 2 years ago
• PacificBiosciences / DevNet
  The DevNet project on github stores the PacBio DevNet website.
  ☆116Updated 6 years ago
• epi2me-labs / wf-human-variation
  ☆124Updated this week
• human-pangenomics / hpgp-data
  Data from the Human PanGenomics Project
  ☆60Updated 3 years ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆115Updated last month
• AndersenLab / VCF-kit
  VCF-kit: Assorted utilities for the variant call format
  ☆129Updated 2 weeks ago
• Illumina / ExpansionHunterDenovo
  A suite of tools for detecting expansions of short tandem repeats
  ☆80Updated last year
• lh3 / bgt
  Flexible genotype query among 30,000+ samples whole-genome
  ☆96Updated 5 years ago
• MikkelSchubert / paleomix
  Pipelines and tools for the processing of ancient and modern HTS data.
  ☆47Updated last month
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆81Updated 2 years ago
• KCCG / ClinSV
  Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data
  ☆69Updated 8 months ago
• nygenome / lancet
  Microassembly based somatic variant caller for NGS data
  ☆154Updated 2 years ago
• broadinstitute / gatk-sv
  A structural variation pipeline for short-read sequencing
  ☆187Updated this week
• nanoporetech / pipeline-structural-variation
  Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
  ☆114Updated 3 years ago
• ryanlayer / stix
  Structural Variant Index
  ☆72Updated 5 months ago