NFDI4Microbiota / nfdi4microbiota-knowledge-baseLinks
The NFDI4Microbiota Knowledge Base, for visualizing dev branch: https://kb-dev.nfdi4microbiota.de
☆30Updated last week
Alternatives and similar repositories for nfdi4microbiota-knowledge-base
Users that are interested in nfdi4microbiota-knowledge-base are comparing it to the libraries listed below
Sorting:
- ☆14Updated 3 years ago
- hybrid assembly and differential binning workflow for metagenomics, transcriptomics and pathway analysis☆69Updated 6 months ago
- We upload the contents of our Data Science Course in this repository☆61Updated 3 years ago
- materials for the RNA-Seq workshop on Trinity and Tuxedo, covering de novo and genome-guided transcript assembly and downstream analysis.☆21Updated 8 years ago
- Toolbox for comparative genomics of MAGs☆85Updated last week
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆202Updated 7 months ago
- ☆39Updated 2 years ago
- ☆144Updated last year
- 3-days Workshop on Data Science with Python in Agriculture☆19Updated 2 years ago
- Hands-on workflow for learning metagenomics including DNA mapping, binning, QC and annotation. Answers and example code available in the…☆12Updated 3 years ago
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆34Updated last week
- ☆10Updated 5 months ago
- ☆10Updated last year
- MicrobiomeReview☆11Updated 2 years ago
- This repo collects the list of podcasts related to microbiome science: science, microbiology and bioinformatics.☆29Updated last week
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆88Updated last year
- PRONAME is an open-source bioinformatics pipeline that allows processing and significantly increasing the accuracy of Nanopore metabarcod…☆11Updated last month
- Bacterial Genome Assembly and Assessment☆26Updated 2 months ago
- ☆50Updated 4 years ago
- ☆53Updated 2 months ago
- HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes☆61Updated 3 years ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆30Updated 5 years ago
- Making whole bacterial genome sequencing data analysis easy☆109Updated 4 months ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆48Updated 4 years ago
- Collection of scripts for bacterial genomics☆48Updated 5 years ago
- Materials and presentations for the 2021 ISB Virtual Microbiome Series.☆26Updated 2 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 6 months ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆75Updated last year
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆86Updated 4 months ago
- MetaCompare☆19Updated last year