rohansachdeva / tandem_repeatsLinks
☆15Updated 3 years ago
Alternatives and similar repositories for tandem_repeats
Users that are interested in tandem_repeats are comparing it to the libraries listed below
Sorting:
- The NFDI4Microbiota Knowledge Base, for visualizing dev branch: https://kb-dev.nfdi4microbiota.de☆30Updated 2 weeks ago
- hybrid assembly and differential binning workflow for metagenomics, transcriptomics and pathway analysis☆69Updated 7 months ago
- Toolbox for comparative genomics of MAGs☆85Updated last week
- Hands-on workflow for learning metagenomics including DNA mapping, binning, QC and annotation. Answers and example code available in the…☆13Updated 3 years ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆204Updated 8 months ago
- ☆146Updated last year
- Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk…☆19Updated 3 years ago
- ☆20Updated 2 years ago
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆26Updated 5 months ago
- ☆20Updated last year
- Lightweight bioinformatics pipeline for microbial genome recovery☆17Updated last week
- ☆10Updated 4 months ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Updated 2 years ago
- ☆24Updated 6 years ago
- Population genomics from metagenomes☆12Updated last year
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Updated last year
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆34Updated last month
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆14Updated this week
- Prophage Activity Estimator☆27Updated last year
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆87Updated last year
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆31Updated this week
- MAGqual is a command line tool to evaluate the quality of metagenomic bins and generate recommended metadata in line with the MIMAG stand…☆15Updated last year
- MicrobiomeReview☆11Updated 2 years ago
- Ready-to-use pipeline to detect, count and identify the hgcAB genes, involved in mercury methylation, from metagenomes☆10Updated last year
- ☆30Updated 7 months ago
- ☆26Updated 2 years ago
- ☆13Updated last year
- Perform taxonomic profiling analyses for long-read shotgun metagenomic datasets. Developed for the Long Read Sequencing Workshop 2022 at …☆13Updated 3 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- ☆18Updated 3 years ago