Alternatives and similar repositories for tandem_repeats

Users that are interested in tandem_repeats are comparing it to the libraries listed below

• NFDI4Microbiota / nfdi4microbiota-knowledge-base
  The NFDI4Microbiota Knowledge Base
  ☆28Updated last week
• RVanDamme / MUFFIN
  hybrid assembly and differential binning workflow for metagenomics, transcriptomics and pathway analysis
  ☆69Updated 5 months ago
• geronimp / enrichM
  Toolbox for comparative genomics of MAGs
  ☆84Updated 2 years ago
• lauralwd / metagenomicspractical
  Hands-on workflow for learning metagenomics including DNA mapping, binning, QC and annotation. Answers and example code available in the…
  ☆12Updated 3 years ago
• mgabriell1 / EUKsemble
  Pipeline for identification of eukaryotic contigs in metagenomic assemblies
  ☆13Updated last year
• ZhenyanZhang / ARG-global
  Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk…
  ☆16Updated 3 years ago
• AlexanderLabWHOI / EukHeist
  ☆26Updated 2 years ago
• Wanli-HE / Plaspline
  ☆18Updated 2 years ago
• Orin-beep / HOTSPOT
  HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.
  ☆10Updated last year
• apcamargo / magpurify2
  Identify and remove contaminants from metagenome-assembled genomes
  ☆18Updated last year
• danielchang2002 / TaxiBGC_2022
  Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…
  ☆16Updated 2 years ago
• mtisza1 / DNA_methylase_finder
  Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes
  ☆11Updated last year
• chg60 / DEPhT
  Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences
  ☆20Updated 7 months ago
• lauriebelch / SOCfinder
  ☆16Updated 2 months ago
• wbazant / CORRAL
  ☆13Updated last year
• AnantharamanLab / PropagAtE
  Prophage Activity Estimator
  ☆26Updated last year
• Matthijnssenslab / ViPER
  Bioinformatics pipeline used in the Laboratory of Viral Metagenomics (KU Leuven) to trim and assemble paired-end Illumina reads, and clas…
  ☆8Updated last month
• RasmussenLab / phamb
  Downstream processing of VAMB binning for Viral Elucidation
  ☆50Updated last year
• YoukaiFromAccounting / skandiver
  skandiver is a program for identifying mobile genetic elements (prophages, plasmids, transposases, etc.) from assembled whole genome sequ…
  ☆12Updated last year
• EBI-Metagenomics / genome_uploader
  Python script to upload bins and MAGs to ENA (European Nucleotide Archive)
  ☆24Updated this week
• xthua / bacant
  This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.
  ☆21Updated 2 years ago
• wandreopoulos / deeplasmid
  ☆20Updated 10 months ago
• arumugamlab / MIntO
  Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data
  ☆14Updated 2 weeks ago
• michaelkyu / PlasX
  PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture
  ☆37Updated 3 years ago
• LottePronk / whokaryote
  Classify metagenomic contigs as eukaryotic or prokaryotic
  ☆37Updated 2 years ago
• amillard / tax_myPHAGE
  Workflow to assign Taxonomy to a bacteriophage genome isolate
  ☆30Updated 3 months ago
• dportik / LRSW-Taxonomic-Profiling-Tutorial
  Perform taxonomic profiling analyses for long-read shotgun metagenomic datasets. Developed for the Long Read Sequencing Workshop 2022 at …
  ☆13Updated 3 years ago
• Matteopaluh / KEMET
  KEGG Module Evaluation Tool
  ☆30Updated last year
• KIT-IBG-5 / mdmcleaner
  MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs
  ☆24Updated 2 years ago
• RogerLab / Eukfinder
  Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data
  ☆25Updated 2 months ago