roryk / tiny-test-dataLinks
Super small biological datasets for unit testing
☆62Updated 6 years ago
Alternatives and similar repositories for tiny-test-data
Users that are interested in tiny-test-data are comparing it to the libraries listed below
Sorting:
- conda recipes for genomic data☆84Updated 4 years ago
- A C library for handling bigWig files☆81Updated 10 months ago
- BigWig and BAM utilities☆98Updated last year
- FireCloud Service Selector (FISS) -- Python bindings and CLI for FireCloud execution engine☆31Updated 7 months ago
- Reference genome resource manager☆74Updated last year
- A read extraction and realignment tool for next generation sequencing data☆103Updated 3 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Rapid sensitive and accurate read mapping via quasi-mapping☆89Updated 5 years ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆94Updated 6 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- ☆83Updated 3 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 9 months ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆125Updated 6 months ago
- TIDDIT - structural variant calling☆77Updated 7 months ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆91Updated 4 years ago
- Merging paired-end reads and removing adapters☆30Updated 5 years ago
- Generic human DNA variant annotation pipeline☆59Updated last year
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- ☆96Updated 3 years ago
- Thousand Variant Callers Project Repository☆74Updated 6 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆142Updated 2 months ago
- JHU EN.600.649: Computational Genomics: Applied Comparative Genomics☆58Updated 7 years ago
- An awk-like VCF parser☆56Updated last year
- Retrieve data in genomic intervals with a Python interface for tabix.☆82Updated 8 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆110Updated 4 years ago
- Read visualizer for structural variants☆84Updated 7 years ago