roryk / tiny-test-dataLinks
Super small biological datasets for unit testing
☆61Updated 5 years ago
Alternatives and similar repositories for tiny-test-data
Users that are interested in tiny-test-data are comparing it to the libraries listed below
Sorting:
- A C library for handling bigWig files☆80Updated 6 months ago
- Reference genome resource manager☆75Updated last year
- BigWig and BAM utilities☆97Updated last year
- conda recipes for genomic data☆85Updated 4 years ago
- Bioinformatics workflows developed for and used on the St. Jude Cloud project.☆36Updated this week
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- A read extraction and realignment tool for next generation sequencing data☆101Updated 2 years ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆122Updated 3 months ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Rapid sensitive and accurate read mapping via quasi-mapping☆90Updated 5 years ago
- Web application to collect and visualise data across multiple MultiQC runs.☆97Updated 7 months ago
- ☆82Updated 3 years ago
- JHU EN.600.649: Computational Genomics: Applied Comparative Genomics☆58Updated 7 years ago
- CLI for interacting with Cromwell servers☆55Updated last year
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆127Updated 2 years ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- ☆95Updated 2 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆142Updated 2 months ago
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- Retrieve data in genomic intervals with a Python interface for tabix.☆82Updated 7 years ago
- Tools for analyzing 10X Genomics data☆42Updated 6 years ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆92Updated 4 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- An awk-like VCF parser☆56Updated last year
- ☆54Updated 5 years ago
- Params validation plugin for Nextflow pipelines☆48Updated 11 months ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆106Updated 4 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 5 months ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago