jandrewrfarrell / RUFUS
RUFUS k-mer based genomic variant detection
☆54Updated 4 months ago
Alternatives and similar repositories for RUFUS
Users that are interested in RUFUS are comparing it to the libraries listed below
Sorting:
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- ☆51Updated 5 years ago
- mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data☆36Updated last month
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- Tools for the analysis of structural variation in genomes☆79Updated last year
- ☆39Updated last year
- Structural Variant Index☆72Updated 5 months ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- ☆39Updated 8 months ago
- small RNA analysis from NGS data☆37Updated 8 months ago
- (WIP) best-practices workflow for rare disease☆60Updated 10 months ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆105Updated 4 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data☆44Updated 5 months ago
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆32Updated last week
- Scripts and utilities related to analyzing short tandem repeats (STRs).☆36Updated this week
- A utility for merging and genotyping Illumina-style GVCFs.☆33Updated 6 years ago
- Method for detecting STR expansions from short-read sequencing data☆62Updated 3 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- Maximum likelihood demultiplexing☆47Updated 3 months ago
- Toolkit for calling structural variants using short or long reads☆102Updated this week
- Data and information about the Polaris study☆53Updated 5 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- BigWig and BAM utilities☆96Updated last year
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆55Updated last year
- FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds☆74Updated 4 years ago