jandrewrfarrell / RUFUS
RUFUS k-mer based genomic variant detection
☆53Updated last month
Alternatives and similar repositories for RUFUS:
Users that are interested in RUFUS are comparing it to the libraries listed below
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Python package and routines for merging VCF files☆29Updated 3 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- A utility for merging and genotyping Illumina-style GVCFs.☆33Updated 5 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- PopSTR - A Population based microsatellite genotyper☆32Updated last year
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- ☆39Updated 5 months ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- Structural Variant Index☆71Updated 2 months ago
- ☆51Updated 5 years ago
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆18Updated last year
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆22Updated last year
- Immuological gene typing and annotation for genome assembly☆31Updated 4 months ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 5 years ago
- ☆79Updated 9 months ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- Prioritize structural variants based on CADD scores☆28Updated 4 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- ☆39Updated 10 months ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆31Updated last year
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Structural Variant Prediction Viewer☆34Updated 7 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago