☆13Sep 22, 2017Updated 8 years ago
Alternatives and similar repositories for course_RNA-seq2017
Users that are interested in course_RNA-seq2017 are comparing it to the libraries listed below
Sorting:
- http://tinyurl.com/cruk-shiny☆11Sep 13, 2017Updated 8 years ago
- New user☆42Oct 1, 2020Updated 5 years ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Nov 22, 2017Updated 8 years ago
- Versatile FASTA/FASTQ demultiplexer.☆33May 29, 2024Updated last year
- ☆36May 19, 2025Updated 9 months ago
- Scripts and files for the annual Short Read Analysis Workshop☆12Jul 21, 2025Updated 7 months ago
- Snakemake based pipeline for RNA-Seq analysis☆31Jun 26, 2019Updated 6 years ago
- 업무자동화를 위한 Python 강의를 듣고 정리한 자료☆13Oct 10, 2017Updated 8 years ago
- ANNOgesic - A Swiss army knife for the RNA-Seq based annotation of bacterial/archaeal genomes☆33Feb 16, 2024Updated 2 years ago
- A pipeline for the computational evaluation of RNA-Seq data☆40Sep 10, 2024Updated last year
- Tool for RNA-Seq analysis.☆39Apr 1, 2022Updated 3 years ago
- An introduction to matrix factorization and PCA and SVD.☆41Sep 28, 2023Updated 2 years ago
- Small R package with some functions to visualize DGE results downstream of DESeq2☆12Jul 6, 2023Updated 2 years ago
- ☆10May 17, 2017Updated 8 years ago
- ☆10Nov 24, 2019Updated 6 years ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆94Jul 18, 2017Updated 8 years ago
- scripts used to analyse horizontal transfer and evolution of transposable elements in 307 vertebrate species☆11May 16, 2021Updated 4 years ago
- a tool for identifying circular RNAs using RNA-Seq data☆12Aug 10, 2015Updated 10 years ago
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- An awesome tool to visualize snakemake rule graphs☆15Jan 9, 2026Updated last month
- reorganize paper of deconvolution method☆11Dec 14, 2023Updated 2 years ago
- Genome free discovery and classification of miRNAs from small RNA-Seq with random forests☆11Jun 12, 2018Updated 7 years ago
- SkewC a novel quality-assessment method to identify poor quality single-cells in scRNA-seq experiments. The method relies on the measure …☆10Aug 2, 2023Updated 2 years ago
- Statistical Computing☆11Jan 24, 2025Updated last year
- ☆11Aug 6, 2019Updated 6 years ago
- Pipeline for Analysis of ChIP-Seq data☆10May 8, 2024Updated last year
- ☆11Aug 3, 2018Updated 7 years ago
- Boiler: a software tool for highly efficient, lossy compression of RNA-seq alignments☆13Jul 14, 2016Updated 9 years ago
- Companion repository for the human variant calling pipeline comparison paper☆11Feb 21, 2022Updated 4 years ago
- Code to go along with a manuscript: Bunis, et. al., Cell Reports, 2021.☆12May 3, 2023Updated 2 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44May 11, 2017Updated 8 years ago
- Web application to collect and visualise data across multiple MultiQC runs.☆95Dec 13, 2024Updated last year
- Comparison of RNA-seq time course differential expression analysis tools☆13Feb 9, 2018Updated 8 years ago
- Single Cell RNA-seq UMI Filtering Facilitator☆10Oct 6, 2025Updated 4 months ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Aug 22, 2017Updated 8 years ago
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆26Oct 5, 2015Updated 10 years ago
- A Unified RNA Sequencing Model (URSM) for joint analysis of single cell and bulk RNA-seq data.☆11Oct 20, 2017Updated 8 years ago
- A simple fastp-MultiQC nextflow pipeline☆12Feb 2, 2023Updated 3 years ago
- snakemake workflow for bulk RNA-seq workflow using STAR-edgeR☆13Feb 19, 2026Updated last week