RNAseq pipeline centered on Salmon
☆29Nov 21, 2024Updated last year
Alternatives and similar repositories for ikra
Users that are interested in ikra are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Common Workflow Language definition files for workflows introduced in DAT2☆11May 23, 2022Updated 4 years ago
- About Workflow related meetup☆14Dec 4, 2024Updated last year
- ☆11Apr 22, 2022Updated 4 years ago
- 生命科学者のためのDr.Bonoデータ解析実践道場☆10Sep 19, 2019Updated 7 years ago
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆37Mar 13, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- GTS: Genome Transformation Subprograms☆15Feb 25, 2023Updated 3 years ago
- Step by step tutorial for CAGE analysis☆10Sep 18, 2025Updated last year
- NGS Data Analysis Textbook Version 2 (Disease Genome Analysis)☆43May 7, 2021Updated 5 years ago
- Common Workflow Language tools and workflows by Pitagora-Network☆32Nov 8, 2022Updated 3 years ago
- 先進ゲノム支援中級者講習会2019☆10Oct 11, 2019Updated 6 years ago
- Web app for automated, systematic, and integrated RNA-seq differential expression analysis☆16May 1, 2026Updated 4 months ago
- Analyzes whole genome sequencing data for gene-editing verification☆13Aug 31, 2026Updated 3 weeks ago
- Docker container for Illumina bcl2fastq☆13Aug 7, 2024Updated 2 years ago
- CWL experimental grammar☆11Nov 16, 2025Updated 10 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- 🔬 Genotyping tool for genome-edited samples using nanopore-targeted sequencing☆14May 22, 2026Updated 4 months ago
- FM-index for full-text search☆20Nov 20, 2021Updated 4 years ago
- CLI tool to verify workflow reproducibility☆17Jan 29, 2024Updated 2 years ago
- ☆12Jun 29, 2018Updated 8 years ago
- WikiPathways Database☆19Updated this week
- Variant-aware CRISPR off-target nomination☆28Sep 17, 2026Updated last week
- Fuji plot—a circos representation of multiple GWAS results—☆99May 29, 2025Updated last year
- SegRef3D: AI-Powered Segmentation and Interactive Refinement for Labor-Saving 3D Reconstruction☆21Sep 16, 2026Updated last week
- DBCLS RDFizing database guidelines☆16Aug 31, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- Workflows written in common workflow language (CWL)☆14Dec 15, 2018Updated 7 years ago
- An R implementation of the SINCERA pipeline for single cell RNA-seq profiling analysis☆29Jan 27, 2021Updated 5 years ago
- A RubyGem that provides common datasets☆33Aug 24, 2026Updated last month
- Fast and scalable cell search tool☆42Mar 27, 2019Updated 7 years ago
- This repository is meant for the participants of the BioHackathon hosted in Paris in Nov 2019 to share ideas, create issues, manage proje…☆25Jul 6, 2021Updated 5 years ago
- Systematic Analysis for Quantification of Expression☆13Jul 22, 2024Updated 2 years ago
- GlycoRDF is an RDF standard for glycomics data.☆17Feb 5, 2025Updated last year
- ☆13Dec 7, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆12May 17, 2018Updated 8 years ago
- Structural variant pipeline☆18Jun 25, 2020Updated 6 years ago
- ☆17May 15, 2024Updated 2 years ago
- Biological file format specimens for testing packages, and functions to assist in testing.☆16Nov 18, 2025Updated 10 months ago
- ChIP-Atlas: Browse and analyze all public ChIP/DNase-seq data on your browser☆85Updated this week
- Implementation of Selective Clustering Annotated using Modes of Projections☆11May 19, 2020Updated 6 years ago
- SPARQList: Repository server for working SPARQL snippets☆15Jun 16, 2026Updated 3 months ago