pitagora-network / DAT2-cwlLinks
Common Workflow Language definition files for workflows introduced in DAT2
☆11Updated 3 years ago
Alternatives and similar repositories for DAT2-cwl
Users that are interested in DAT2-cwl are comparing it to the libraries listed below
Sorting:
- A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…☆20Updated 2 years ago
- ☆11Updated 3 years ago
- About Workflow related meetup☆14Updated 8 months ago
- ☆33Updated this week
- A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…☆24Updated last month
- Accumulating container resource usage with workflow metadata☆19Updated 4 years ago
- Common Workflow Language tools and workflows by Pitagora-Network☆33Updated 2 years ago
- RNAseq pipeline centered on Salmon☆29Updated 9 months ago
- Modular Multi-scale Integrated Genome Graph Browser☆92Updated last week
- mtDNA Variant Caller☆34Updated 8 months ago
- [IMPORTANT: not for real data analysis, only for algorithm evaluation] fast and accurate alignment tool for PacBio and Nanopore long read…☆125Updated 6 years ago
- CLI tool to verify workflow reproducibility☆16Updated last year
- CWL CommandLineTool descriptions for biology/life-sciences related applications☆79Updated 5 months ago
- Super small biological datasets for unit testing☆61Updated 5 years ago
- Python bindings to UCSC BigWig and BigBed library☆33Updated 4 months ago
- A collection of reusable WDL tasks. Category:Other☆88Updated 2 weeks ago
- Testing building mulled containers for multi-requirement tools.☆76Updated last week
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆44Updated last year
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 6 months ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- Annotation of VCF variants with functional impact and from databases (executable+library)☆61Updated last week
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆87Updated 10 months ago
- Web app for automated, systematic, and integrated RNA-seq differential expression analysis☆15Updated 4 months ago
- Module for embedding igv.js in an IPython notebook☆78Updated 6 months ago
- Thousand Variant Callers Project Repository☆73Updated 5 years ago
- SV detection tool for nanopore sequence reads☆93Updated 4 months ago
- TIDDIT - structural variant calling☆76Updated 4 months ago
- Efficiently read and write sequencing data from Python☆66Updated 3 months ago
- Retrieve data in genomic intervals with a Python interface for tabix.☆82Updated 8 years ago
- Collect of SO Ontologies☆100Updated 3 weeks ago