common-workflow-language / workflow-service
Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows
☆36Updated last month
Alternatives and similar repositories for workflow-service:
Users that are interested in workflow-service are comparing it to the libraries listed below
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- The WES API is a standard way to run and manage portable workflows.☆83Updated 6 months ago
- ☆11Updated 8 years ago
- APIs for discovering genomics tools, their metadata and their containers☆31Updated 5 months ago
- An open-source, cloud-ready web application for simplified deployment of big data workflows.☆33Updated 9 months ago
- Accumulating container resource usage with workflow metadata☆19Updated 4 years ago
- Create cwl workflows by writing a simple Python script☆40Updated 4 years ago
- A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…☆22Updated 3 months ago
- Workflow Description Language compiler for the DNAnexus platform☆40Updated last year
- IPython2CWL is a tool for converting IPython Jupyter Notebooks to CWL Command Line Tools by simply providing typing annotation.☆15Updated 2 years ago
- A translator from WDL to CWL v1.2☆27Updated 2 months ago
- CWL for GDC DNASeq workflows☆22Updated this week
- transparently build CWL and Galaxy XML tool definitions for any script that uses argparse☆27Updated 5 months ago
- WDL plugin for pytest☆48Updated last year
- Docker images of bioinformatics software☆21Updated 7 years ago
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Updated 5 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 6 years ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆43Updated last year
- X things you should take into consideration if you code for big data analysis☆23Updated 6 years ago
- GA4GH Task Execution Service Root Project + Deployment scripts on Kubernetes☆41Updated 3 months ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- Python utilities for CWL☆39Updated last month
- Request for comments on interchangeable bioinformatics containers☆40Updated 5 years ago
- cwl-tes submits your tasks to a TES server. Task submission is parallelized when possible.☆18Updated 2 years ago
- Parallel Recipes : parallel workflow execution made easy☆13Updated 9 years ago
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆14Updated 4 years ago
- Butler is a framework for running scientific workflows on public and academic clouds.☆69Updated 5 years ago
- A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…☆19Updated 2 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Workflow Description Language - Specification and Implementations☆26Updated 6 years ago