common-workflow-language / workflow-service
Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows
☆36Updated last week
Alternatives and similar repositories for workflow-service:
Users that are interested in workflow-service are comparing it to the libraries listed below
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- ☆11Updated 8 years ago
- transparently build CWL and Galaxy XML tool definitions for any script that uses argparse☆27Updated 4 months ago
- Create cwl workflows by writing a simple Python script☆40Updated 4 years ago
- Accumulating container resource usage with workflow metadata☆19Updated 4 years ago
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Updated 5 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 6 years ago
- ☆83Updated 3 weeks ago
- A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…☆22Updated 2 months ago
- An open-source, cloud-ready web application for simplified deployment of big data workflows.☆33Updated 8 months ago
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆14Updated 4 years ago
- The WES API is a standard way to run and manage portable workflows.☆83Updated 6 months ago
- CWL for GDC DNASeq workflows☆22Updated 2 weeks ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆42Updated last year
- WDL plugin for pytest☆48Updated last year
- Butler is a framework for running scientific workflows on public and academic clouds.☆69Updated 5 years ago
- Request for comments on interchangeable bioinformatics containers☆40Updated 5 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- GA4GH Task Execution Service Root Project + Deployment scripts on Kubernetes☆41Updated 2 months ago
- The snakemake interface, currently works like a notebook (under development)☆18Updated 3 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Updated 8 years ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- A translator from WDL to CWL v1.2☆27Updated last month
- Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…☆69Updated 4 months ago
- a place for GA4GH-related wiki pages☆16Updated 7 years ago
- Docker images of bioinformatics software☆21Updated 7 years ago
- Python utilities for CWL☆39Updated 3 weeks ago
- CWL CommandLineTool descriptions for biology/life-sciences related applications☆78Updated last week
- CWL experimental grammar☆11Updated 2 years ago