Alternatives and similar repositories for genevieve

Users that are interested in genevieve are comparing it to the libraries listed below

• quinlan-lab / vcftidy
  normalize, left-align, trim, validate and clean VCF files
  ☆20Updated 9 years ago
• medvedevgroup / varmatch
  robust matching of small variant datasets using flexible scoring schemes
  ☆10Updated 5 years ago
• nmdp-bioinformatics / flow
  Consensus assembly and variant calling workflow.
  ☆12Updated 9 years ago
• lgautier / fastq-and-furious
  Efficient handling of FASTQ files from Python
  ☆51Updated 8 months ago
• vgteam / xg-old
  succinct labeled graphs with collections and paths
  ☆15Updated 6 years ago
• mskilab-org / gGnome.js
  ☆26Updated 2 years ago
• clintval / genome-browser
  A lightweight Python graphing API for genomic features
  ☆15Updated 2 years ago
• ncbi / magicblast
  ☆36Updated last month
• PapenfussLab / PathOS
  PathOS is a clinical application for filtering, analysing and reporting on NGS variants
  ☆28Updated 4 years ago
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 5 years ago
• evoldoers / wtfgenes
  What's The Function of these genes?
  ☆22Updated 8 years ago
• alimanfoo / vcfnp
  Load numpy arrays and HDF5 files from VCF (variant call format)
  ☆31Updated 7 years ago
• sjackman / docker-bio
  Docker images of bioinformatics software
  ☆21Updated 7 years ago
• mutalyzer / description-extractor
  HGVS variant description extractor
  ☆11Updated 4 years ago
• iobio / iobio.viz
  Visualization and charting JS library for streaming genomic data
  ☆19Updated 5 months ago
• humanlongevity / tredparse
  TREDPARSE: HLI Short Tandem Repeat (STR) caller
  ☆25Updated 4 years ago
• ekg / fastahack
  utilities for indexing and sequence extraction from FASTA files
  ☆59Updated 4 years ago
• refresh-bio / GTC
  GenoTypes Compressor
  ☆15Updated 2 years ago
• nextflow-io / cwl2nxf
  Import a CWL workflow specification to Nextflow script (experimental)
  ☆27Updated 6 years ago
• mklarqvist / tomahawk
  Fast calculations of linkage-disequilibrium in large-scale human cohorts
  ☆43Updated 5 years ago
• common-workflow-lab / wdl2cwl
  [Experimental] Workflow Definition Language (WDL) to CWL
  ☆28Updated 3 years ago
• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆85Updated 3 years ago
• quinlan-lab / pathoscore
  pathoscore evaluates variant pathogenicity tools and scores.
  ☆21Updated 3 years ago
• cancerit / cgpBigWig
  BigWig manpulation tools using libBigWig and htslib
  ☆29Updated 9 months ago
• quinlan-lab / vcf2db
  create a gemini-compatible database from a VCF
  ☆56Updated 4 years ago
• EdinburghGenomics / well_duplicates
  localised duplicate detection on patterned flow cells
  ☆10Updated 6 years ago
• dnil / rhocall
  Call regions of homozygosity and make tentative UPD calls
  ☆11Updated 5 months ago
• brentp / rare-disease-wf
  (WIP) best-practices workflow for rare disease
  ☆60Updated 10 months ago
• loosolab / UROPA
  Universal RObust Peak Annotator
  ☆16Updated last year
• opencb / biodata
  Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics. Found a bu…
  ☆30Updated this week