As a part of COVID-19 Host Genetics Initiative, we perform the following set of analyses to better understand the genetic basis of COVID-19 susceptibility and severity.
☆43May 7, 2020Updated 5 years ago
Alternatives and similar repositories for covid19
Users that are interested in covid19 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…☆14Jan 31, 2024Updated 2 years ago
- Toy simulations and analyses of heritability and genetic differences☆11Jul 17, 2024Updated last year
- Suite of heritability and genetic correlation estimation tools for exome-sequencing data☆35Dec 5, 2025Updated 3 months ago
- A python package for learning mutational signatures and their multidimensional genomic properties☆15Sep 1, 2020Updated 5 years ago
- Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)☆10Jan 26, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Nov 21, 2019Updated 6 years ago
- Multilayer modelling of the human transcriptome and biological mechanisms of complex diseases and traits☆11Jun 2, 2021Updated 4 years ago
- Python for HLA analysis: summary, association analysis, zygosity test and interaction test☆38Jul 24, 2024Updated last year
- A series of tools and pipelines for genotyping MHC / HLA genes and alleles using SMRT Sequencing☆22Aug 29, 2016Updated 9 years ago
- A collection of modules to process and analyze IMGT-HLA sequences.☆29Dec 18, 2022Updated 3 years ago
- Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.☆15Feb 17, 2025Updated last year
- R package – HLA Genotype Imputation with Attribute Bagging (development version only)☆31May 24, 2025Updated 10 months ago
- ☆198May 2, 2022Updated 3 years ago
- Funding schemes and travel grant opportunities for postdocs☆10Jun 2, 2018Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- DEPICT code, instructions and an example☆54Dec 10, 2025Updated 3 months ago
- Simple matching of HTS samples based on HLA typing☆14Jan 4, 2017Updated 9 years ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆14Jan 15, 2017Updated 9 years ago
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆54Dec 19, 2023Updated 2 years ago
- xSqueezeIt VCF/BCF Genotype data compressor with extensible compute friendly format☆14Aug 5, 2025Updated 7 months ago
- Software for linkage disequilibrium graphical models☆16Apr 6, 2025Updated 11 months ago
- Stratified squared trans-ethnic genetic correlation☆14May 12, 2022Updated 3 years ago
- Mediated Expression Score Regression (MESC)☆27Nov 4, 2025Updated 4 months ago
- Code and simulations using interaction-LD score regression☆13Jul 2, 2024Updated last year
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Spark VCF data source implementation for Dataframes☆15Jul 15, 2022Updated 3 years ago
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆13Nov 12, 2019Updated 6 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Sep 1, 2023Updated 2 years ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆17Jan 19, 2018Updated 8 years ago
- Extract raw R code directly from webpages, including Github, Kaggle, Stack Overflow, and sites made using Blogdown.☆15Oct 18, 2021Updated 4 years ago
- Clean repository for the Cambridge COVID-19 ICU simulation☆12Mar 29, 2020Updated 5 years ago
- ☆29Sep 4, 2023Updated 2 years ago
- A clustering algorithm that can perform internal validation inspired by forest fire dynamics and self-organized criticality☆18May 18, 2022Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆22Oct 27, 2021Updated 4 years ago
- Scalable Ultra-Sparse Bayesian PCA☆33Feb 13, 2024Updated 2 years ago
- ☆17Jun 4, 2021Updated 4 years ago
- Examples using R and 1000 genomes data☆29May 18, 2021Updated 4 years ago
- HLA-I ligand predictor☆44Mar 19, 2026Updated last week
- Probabilistic HLA typing☆35Aug 31, 2019Updated 6 years ago
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆24Aug 20, 2024Updated last year