rivas-lab / covid19
As a part of COVID-19 Host Genetics Initiative, we perform the following set of analyses to better understand the genetic basis of COVID-19 susceptibility and severity.
☆43Updated 4 years ago
Alternatives and similar repositories for covid19:
Users that are interested in covid19 are comparing it to the libraries listed below
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆49Updated 5 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated 3 months ago
- Generalized linear Mixed Model Association Tests☆38Updated last year
- Sample code for ldsc analyses in UKBB☆30Updated last year
- Repository for resources we'd like to share with the community.☆24Updated 2 years ago
- Learn and validate subtypes from multiple traits☆20Updated 3 years ago
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated last month
- Main ricopili repo for public releases☆43Updated this week
- An R package for import, QC and analysis of Illumina Infinium genotyping arrays☆33Updated 6 years ago
- Differential Count Data Analysis Toolbox☆61Updated 11 months ago
- LASSO for GWAS with summary statistics☆72Updated 4 years ago
- topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…☆55Updated 3 months ago
- Suite of heritability and genetic correlation estimation tools for exome-sequencing data☆33Updated last week
- Easily download publicly available GWAS summary statistics.☆74Updated last year
- Scripts used for generating Neale Lab UKB results☆19Updated 2 years ago
- Code for the in-dev PrediXcan Project☆27Updated 2 years ago
- tools to efficiently retrieve and calculate LD☆32Updated 3 years ago
- Representation and manipulation of genomic intervals☆45Updated 2 months ago
- Statistical properties of polygenic risk scores☆19Updated 5 years ago
- R package for quality control of plink genetic datasets☆57Updated 3 weeks ago
- Analysis for svaseq paper☆19Updated 10 years ago
- snpnet: Fast and scalable lasso/elastic-net solver for large SNP data☆32Updated 8 months ago
- Get SNP proxies from the 1000 Genomes Project.☆28Updated 6 years ago
- ☆20Updated last year
- LDlink is a suite of web-based applications designed to easily and efficiently interrogate linkage disequilibrium in population groups. E…☆22Updated last week
- Code and simulations using biologically annotated neural networks☆21Updated 3 years ago
- Harmonise GWAS summary statistics against a reference VCF☆41Updated 3 years ago
- Statistical power studies for multi-omics experiments.☆30Updated last week
- Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.☆37Updated 2 years ago
- Functional genomics and genome-wide association studies☆65Updated 6 years ago