gusevlab / hsq_ancestry_examples
Toy simulations and analyses of heritability and genetic differences
☆11Updated 9 months ago
Alternatives and similar repositories for hsq_ancestry_examples:
Users that are interested in hsq_ancestry_examples are comparing it to the libraries listed below
- ☆13Updated 2 years ago
- Suite of heritability and genetic correlation estimation tools for exome-sequencing data☆33Updated 2 months ago
- ldshrink: a one-stop R package for shrinkage estimation of linkage disequilibrium☆12Updated 4 years ago
- Code and simulations using interaction-LD score regression☆13Updated 10 months ago
- Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform …☆26Updated last year
- A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.☆43Updated 2 months ago
- Code for creating cell-type-specific regulatory element annotation files☆18Updated 10 months ago
- Effective Computing—Resources for Computational Biologists☆26Updated 5 years ago
- Mediated Expression Score Regression (MESC)☆26Updated 2 years ago
- An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.☆39Updated 5 months ago
- Software for linkage disequilibrium graphical models☆16Updated last month
- Software to perform multi-ancestry SNP fine-mapping on molecular data☆20Updated 6 months ago
- Heritability, genetic correlation and functional enrichment estimation for case-control studies☆19Updated last year
- A pipeline for phasing UK Biobank whole genome sequence data☆18Updated 2 years ago
- Cross-population weighting framework to improve genetic risk prediction in ancestrally diverse populations☆16Updated 9 months ago
- Total and allele specific read based cis-QTL, fine-mapping, and prediction☆9Updated 4 years ago
- ☆17Updated 3 years ago
- tools in python and R for analyzing biological count data, especially from single cell RNAseq☆22Updated last year
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Updated 2 years ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆21Updated 4 years ago
- QTL Discovery using Annotations☆24Updated 2 years ago
- ☆28Updated 9 months ago
- Code for implementing Mendelian randomization investigations☆17Updated 9 years ago
- Toolkit for QTL mapping and meta-analysis.☆16Updated 2 years ago
- Create LocusZoom-style plots in R.☆21Updated 2 years ago
- package for the causal TWAS project☆41Updated last week
- Stratified squared trans-ethnic genetic correlation☆12Updated 2 years ago
- genetic correlation between phenotypes in the UK biobank☆12Updated last year
- Pairwise Hierarchical Model☆17Updated 3 years ago
- Scripts used for generating Neale Lab UKB results☆19Updated 2 years ago