gusevlab / hsq_ancestry_examples
Toy simulations and analyses of heritability and genetic differences
☆10Updated 4 months ago
Related projects ⓘ
Alternatives and complementary repositories for hsq_ancestry_examples
- Code and simulations using interaction-LD score regression☆12Updated 4 months ago
- Effective Computing—Resources for Computational Biologists☆24Updated 4 years ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆21Updated 4 years ago
- Code for creating cell-type-specific regulatory element annotation files☆18Updated 5 months ago
- TOP results by CONfident efFECT Sizes.☆14Updated last year
- R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)☆10Updated 4 years ago
- quincunx: an R package to query, download and wrangle PGS Catalog data☆14Updated 2 years ago
- ldshrink: a one-stop R package for shrinkage estimation of linkage disequilibrium☆11Updated 3 years ago
- Total and allele specific read based cis-QTL, fine-mapping, and prediction☆9Updated 3 years ago
- Software to perform multi-ancestry SNP fine-mapping on molecular data☆15Updated 3 weeks ago
- An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.☆36Updated 5 months ago
- Pairwise Hierarchical Model☆13Updated 2 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- Heritability, genetic correlation and functional enrichment estimation for case-control studies☆18Updated 11 months ago
- QTL Discovery using Annotations☆23Updated last year
- ☆17Updated 3 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated last month
- Sample code for ldsc analyses in UKBB☆28Updated last year
- An Efficient Multiple-Testing Adjustment for eQTL Studies that Accounts for Linkage Disequilibrium between Variants☆10Updated 5 years ago
- Code for implementing Mendelian randomization investigations☆15Updated 9 years ago
- Toolkit for QTL mapping and meta-analysis.☆16Updated 2 years ago
- Create LocusZoom-style plots in R.☆20Updated last year
- genetic correlation between phenotypes in the UK biobank☆13Updated 9 months ago
- metaUSAT is a data-adaptive statistical approach for testing genetic associations of multiple traits from single/multiple studies using u…☆19Updated 3 years ago
- Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)☆30Updated 9 months ago
- Suite of heritability and genetic correlation estimation tools for exome-sequencing data☆31Updated last month
- ☆11Updated last year
- Scripts for running a sibling GWAS☆13Updated 2 years ago
- Software to infer latent pleiotropic components from GWAS summary data☆12Updated last month
- Learn and validate subtypes from multiple traits☆20Updated 3 years ago