tjiagoM / gtex-transcriptome-modellingLinks
Multilayer modelling of the human transcriptome and biological mechanisms of complex diseases and traits
☆11Updated 4 years ago
Alternatives and similar repositories for gtex-transcriptome-modelling
Users that are interested in gtex-transcriptome-modelling are comparing it to the libraries listed below
Sorting:
- A Library for Denoising Single-Cell Data with Random Matrix Theory☆37Updated 2 years ago
- HiDeF (Hierarchical community Decoding Framework)☆15Updated last year
- PyTorch implementation of BasisVAE: Translation-invariant feature-level clustering with Variational Autoencoders☆42Updated 5 years ago
- ☆20Updated 4 years ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆41Updated 2 years ago
- ☆16Updated last year
- Code for Nature Scientific Reports 2020 paper: "Unsupervised generative and graph neural methods for modelling cell differentiation" by I…☆18Updated 5 years ago
- ☆15Updated 3 years ago
- Framework for integrating heterogeneous modalities of data☆17Updated 2 years ago
- Latent spaces for single cells☆21Updated last year
- ☆16Updated 3 years ago
- Imputation of single cell RNA-sequencing data with autoencoder☆16Updated 4 years ago
- Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods☆22Updated 6 months ago
- generalized principal component analysis (GLM-PCA) implemented in python☆60Updated 4 years ago
- Fast Inference of Networks from Directed Regulations☆22Updated last year
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Updated 4 years ago
- Python code for genetic marker selection using linear programming☆42Updated last year
- ☆10Updated last year
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- Archetypal Analysis network (AAnet)☆37Updated 6 months ago
- Similarity search in heterogeneous knowledge graphs using meta paths.☆27Updated 2 years ago
- Snakemake workflow to benchmark scRNA-seq data simulators☆13Updated 3 years ago
- Categorical Variational Autoencoders☆24Updated 3 years ago
- Learning disentangled representations of single-cell data for high-quality generation☆16Updated last year
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆40Updated 3 years ago
- ☆28Updated last year
- A data analysis package for high-dimensional, multi-block data.☆12Updated 3 years ago
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆26Updated 2 years ago
- Hypergraph Factorisation☆25Updated 9 months ago
- Parallel opt-SNE implementation with Python wrapper☆37Updated 3 years ago