tjiagoM / gtex-transcriptome-modellingLinks
Multilayer modelling of the human transcriptome and biological mechanisms of complex diseases and traits
☆11Updated 4 years ago
Alternatives and similar repositories for gtex-transcriptome-modelling
Users that are interested in gtex-transcriptome-modelling are comparing it to the libraries listed below
Sorting:
- Framework for integrating heterogeneous modalities of data☆17Updated 3 years ago
- A Library for Denoising Single-Cell Data with Random Matrix Theory☆37Updated 2 years ago
- Latent spaces for single cells☆21Updated 2 years ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆42Updated 2 years ago
- ☆15Updated 3 years ago
- Snakemake workflow to benchmark scRNA-seq data simulators☆14Updated 3 years ago
- Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods☆23Updated 8 months ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- R package for the identification of cancer-associated mutated genes using gene expression and mutation data.☆11Updated 4 years ago
- ☆17Updated last year
- PyTorch implementation of BasisVAE: Translation-invariant feature-level clustering with Variational Autoencoders☆42Updated 5 years ago
- generalized principal component analysis (GLM-PCA) implemented in python☆60Updated 4 years ago
- HiDeF (Hierarchical community Decoding Framework)☆15Updated last year
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Updated 4 years ago
- ☆20Updated 4 years ago
- Imputation of single cell RNA-sequencing data with autoencoder☆16Updated 4 years ago
- Automated Modelling for Biological Evidence-based Research☆47Updated 2 years ago
- Fast Inference of Networks from Directed Regulations☆22Updated last year
- Maximum mean discrepancy comparisons for single cell profiling experiments☆18Updated 3 years ago
- Conditional out-of-distribution prediction☆62Updated last year
- ☆28Updated 2 years ago
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆26Updated 2 years ago
- Archetypal Analysis network (AAnet)☆37Updated 9 months ago
- Hypergraph Factorisation☆26Updated 11 months ago
- Variant impact phenotyping using Perturb-seq☆10Updated last year
- Contrastive Poisson latent variable models (CPLVMs)☆11Updated 3 years ago
- resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially usin…☆12Updated 2 years ago
- Interpretable splicing model☆20Updated 2 years ago
- Creating multi-resolution embeddings and clusters from high dimensional data☆56Updated last year
- Code for Nature Scientific Reports 2020 paper: "Unsupervised generative and graph neural methods for modelling cell differentiation" by I…☆18Updated 5 years ago