Alternatives and similar repositories for aSPU:

Users that are interested in aSPU are comparing it to the libraries listed below

• RayDebashree / metaUSAT
  metaUSAT is a data-adaptive statistical approach for testing genetic associations of multiple traits from single/multiple studies using u…
  ☆19Updated 3 years ago
• FINNGEN / CS-PRS-pipeline
  PRS pipeline using PRS_CS
  ☆13Updated 2 months ago
• lsncibb / SummaryAUC
  Calculate AUC based on GWAS summary statistics only
  ☆10Updated 6 years ago
• sb452 / mr-code
  Code for implementing Mendelian randomization investigations
  ☆17Updated 9 years ago
• immunogenomics / cov-ldsc
  ☆11Updated 2 years ago
• Nealelab / UKBB_ldsc
  Sample code for ldsc analyses in UKBB
  ☆30Updated last year
• yandorazhang / GENESIS
  GENetic Effect-Size distribution Inference from Summary-level data
  ☆14Updated 4 years ago
• wouterpeyrot / CCGWAS
  ☆19Updated 2 years ago
• andreyshabalin / ramwas
  RaMWAS: Fast Methylome-Wide Association Study Pipeline for Enrichment Platforms
  ☆10Updated 3 years ago
• omerwe / S-PCGC
  Heritability, genetic correlation and functional enrichment estimation for case-control studies
  ☆19Updated last year
• oliviasabik / RACER
  An R package for generating comparative regional association plots
  ☆18Updated 3 months ago
• kjgleason / Primo
  Primo
  ☆16Updated 3 years ago
• dongjunchung / GPA
  GPA: Genetic analysis incorporating Pleiotropy and Annotation
  ☆15Updated 5 years ago
• ipdgc / Manhattan-Plotter
  This is a repository to help make plots similar to Figure 2 in https://www.biorxiv.org/content/10.1101/388165v3
  ☆12Updated 6 years ago
• Nealelab / UKBB_ldsc_scripts
  Scripts used for generating Neale Lab UKB results
  ☆19Updated 2 years ago
• astheeggeggs / UKBB_ldsc_r2
  genetic correlation between phenotypes in the UK biobank
  ☆12Updated last year
• scbaca / cwas
  Workflow for performing cistrome-wide associations studies
  ☆10Updated 2 years ago
• hakyim / TO-DELETE-PrediXcan
  Code for the in-dev PrediXcan Project
  ☆27Updated 2 years ago
• yanglab-emory / TIGAR
  ☆21Updated 2 weeks ago
• leekgroup / networks_correction
  Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"
  ☆16Updated 5 years ago
• precimed / pleiofdr
  Pleiotropy-informed conditional and conjunctional false discovery rate
  ☆28Updated last year
• andywdahl / rgwas
  Learn and validate subtypes from multiple traits
  ☆20Updated 3 years ago
• tobyjohnson / gtx
  Genetics ToolboX R package
  ☆31Updated 5 years ago
• GRealesM / RapidoPGS
  A rapido and lightweight method for PGS computation
  ☆14Updated 2 months ago
• RajLabMSSM / catalogueR
  Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).
  ☆13Updated 2 years ago
• mancusolab / FactorGo
  Software to infer latent pleiotropic components from GWAS summary data
  ☆13Updated 2 months ago
• MRCIEU / PHESANT-MR-pheWAS-BMI
  ☆13Updated 6 years ago
• andrewejaffe / devMeth450k
  Supplementary Code for "Mapping DNA methylation across development, genotype, and schizophrenia in the human frontal cortex"
  ☆12Updated 9 years ago
• stephaniehicks / methylCC
  R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms
  ☆19Updated 2 years ago
• boxiangliu / locuscompare
  LocusCompare is an interactive visualization tool for comparing two genetic association datasets.
  ☆21Updated 2 years ago