This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
☆125Feb 26, 2025Updated last year
Alternatives and similar repositories for dyMEAN
Users that are interested in dyMEAN are comparing it to the libraries listed below
Sorting:
- This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.☆103Apr 7, 2023Updated 2 years ago
- ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)☆354Jun 29, 2023Updated 2 years ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆37Nov 7, 2024Updated last year
- Antibody-specific masked language model☆68Jul 16, 2023Updated 2 years ago
- open source repository☆146Nov 30, 2023Updated 2 years ago
- ☆108Apr 1, 2023Updated 2 years ago
- Generative Language Modeling for Antibody Design☆183Oct 5, 2024Updated last year
- Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies☆406Sep 3, 2023Updated 2 years ago
- Improved antibody structure-based design using inverse folding☆153Dec 9, 2025Updated 2 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆61Oct 25, 2023Updated 2 years ago
- ☆212Sep 24, 2024Updated last year
- p-IgGen: A Generative Paired Antibody Language Model☆13May 6, 2025Updated 9 months ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆226Aug 7, 2025Updated 6 months ago
- NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement☆47Oct 28, 2023Updated 2 years ago
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆62Jun 17, 2024Updated last year
- Machine learning-driven antibody design☆63Jul 5, 2023Updated 2 years ago
- PyTorch code for KDD 2023 paper "Pre-training Antibody Language Models for Antigen-Specific Computational Antibody Design"☆55Nov 14, 2023Updated 2 years ago
- Official open-source of Antibody Design Using a Score-based Diffusion Model Guided by Evolutionary, Physical, and Geometric Constraints☆48Jun 30, 2025Updated 8 months ago
- Code for ColabDock paper☆151May 1, 2025Updated 10 months ago
- ☆97Oct 15, 2024Updated last year
- Polyreactivity Website☆21Jun 26, 2023Updated 2 years ago
- open source code for Tencent tFold☆143Mar 14, 2025Updated 11 months ago
- Fast protein backbone generation with SE(3) flow matching.☆314Jul 19, 2024Updated last year
- Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)☆229Dec 29, 2023Updated 2 years ago
- Official Implementation of IgGM☆179Nov 30, 2025Updated 3 months ago
- The official implementation of the ICLR'23 paper PiFold: Toward effective and efficient protein inverse folding.☆183Jun 17, 2023Updated 2 years ago
- Protein language model customized for antibodies☆149Mar 21, 2025Updated 11 months ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆129Nov 19, 2025Updated 3 months ago
- Antibody Langauge Ensemble Fusion - fuses antibody structural ensemble and language representation for property prediction☆13Apr 23, 2024Updated last year
- ☆11Aug 26, 2024Updated last year
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆328Oct 28, 2024Updated last year
- Protein Design with Guided Discrete Diffusion☆141Feb 21, 2024Updated 2 years ago
- Diffusion-based all-atom protein generative model.☆232Aug 27, 2025Updated 6 months ago
- Codes for our paper "Full-Atom Peptide Design with Geometric Latent Diffusion" (NeurIPS 2024)☆107Apr 16, 2025Updated 10 months ago
- AbLang: A language model for antibodies☆158Sep 22, 2023Updated 2 years ago
- Code for humanization of antibody and nanobody☆76Aug 28, 2025Updated 6 months ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆91Jun 11, 2025Updated 8 months ago
- The official implementation of the NeurIPS'23 paper ProteinInvBench: Benchmarking Protein Design on Diverse Tasks, Models, and Metrics☆200Sep 18, 2024Updated last year
- Official repository for the ProteinGym benchmarks☆391Jan 12, 2026Updated last month