THUNLP-MT / dyMEANLinks
This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
☆114Updated 5 months ago
Alternatives and similar repositories for dyMEAN
Users that are interested in dyMEAN are comparing it to the libraries listed below
Sorting:
- This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.☆96Updated 2 years ago
- ☆106Updated 2 years ago
- ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)☆109Updated last year
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated last year
- ☆74Updated 6 months ago
- ☆92Updated 9 months ago
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆58Updated last year
- Official repository of EnzymeFlow☆92Updated 8 months ago
- [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design☆75Updated 3 months ago
- Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)☆36Updated last year
- ☆106Updated 2 months ago
- Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)☆89Updated 2 months ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆82Updated 2 months ago
- FABind: Fast and Accurate Protein-Ligand Binding (NeurIPS 2023)☆134Updated 3 weeks ago
- A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)☆90Updated 7 months ago
- Codes for our paper "Full-Atom Peptide Design with Geometric Latent Diffusion" (NeurIPS 2024)☆85Updated 3 months ago
- This is the official repository of paper - GeoAB: Towards Realistic Antibody Design and Reliable Affinity Maturation (ICML2024)☆40Updated last year
- Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing☆89Updated last year
- Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…☆75Updated last year
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆98Updated last year
- An awesome & curated list of docking papers☆113Updated 5 months ago
- Evaluating Protein Binding Interfaces with Transformer Networks☆47Updated last year
- ☆115Updated last month
- ☆198Updated 10 months ago
- ☆40Updated last year
- Official repository of ReactZyme☆36Updated 9 months ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆115Updated last month
- Official repository for DiffPepBuilder and DiffPepDock tools☆94Updated last week
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆80Updated last year
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆87Updated 3 weeks ago