iambic-therapeutics / np-bench
A benchmark for 3D biomolecular structure prediction models
☆52Updated 2 months ago
Alternatives and similar repositories for np-bench:
Users that are interested in np-bench are comparing it to the libraries listed below
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆35Updated 2 months ago
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆86Updated this week
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆47Updated last month
- Efficient manipulation of protein structures in Python☆51Updated 3 months ago
- code for SeqDance, a biophysics-informed protein language model☆22Updated 3 months ago
- ☆72Updated this week
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆65Updated last week
- Geometric Flow Matching for Generative Protein-Ligand Docking and Affinity Prediction (CASP16)☆72Updated 3 weeks ago
- ☆66Updated last year
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆65Updated 3 months ago
- Official repository of GENzyme☆41Updated 2 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆54Updated last year
- Structure prediction of alternative protein conformations☆74Updated 5 months ago
- ☆68Updated 7 months ago
- ☆81Updated 4 months ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆37Updated 8 months ago
- ☆33Updated 5 months ago
- ☆46Updated last week
- Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.☆27Updated 11 months ago
- Fast and accurate molecular docking with an AI pose scoring function☆37Updated last year
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆31Updated last year
- ☆78Updated 11 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆41Updated 2 months ago
- ☆24Updated 2 months ago
- ☆36Updated last year
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆71Updated 11 months ago
- Extension of ThermoMPNN for double mutant predictions☆24Updated last month
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆38Updated 9 months ago
- ☆34Updated 10 months ago