iambic-therapeutics / np-benchLinks
A benchmark for 3D biomolecular structure prediction models
☆59Updated 2 months ago
Alternatives and similar repositories for np-bench
Users that are interested in np-bench are comparing it to the libraries listed below
Sorting:
- Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2☆49Updated last week
- Composing Unbalanced Flows for Flexible Docking and Relaxation (ICLR 2025)☆43Updated 3 weeks ago
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆43Updated 7 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆51Updated last month
- Sidechain conditioning and modeling for full-atom protein sequence design☆110Updated 3 weeks ago
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆45Updated 6 months ago
- Extension of ThermoMPNN for double mutant predictions☆36Updated 2 weeks ago
- Structure prediction and design of proteins with noncanonical amino acids☆78Updated last week
- mdml: Deep Learning for Molecular Simulations☆43Updated last month
- Quick mapping of Uniprot sequences to PDB structures☆32Updated 3 months ago
- ☆68Updated last year
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆78Updated last year
- Convert coarse-grained protein structure to all-atom model☆40Updated last month
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆31Updated last year
- ☆37Updated 2 weeks ago
- PoseX: A Molecular Docking Benchmark☆44Updated last week
- ☆32Updated last year
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆59Updated last month
- ☆65Updated last year
- Modelling protein conformational landscape with Alphafold☆51Updated 2 weeks ago
- Fast and accurate molecular docking with an AI pose scoring function☆40Updated last year
- Code for humanization of antibody and nanobody☆44Updated 7 months ago
- ☆70Updated 3 months ago
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆39Updated last year
- ☆53Updated last month
- Benchmarking code accompanying the release of `bioemu`☆32Updated this week
- Multi-domain Distribution Learning for De Novo Drug Design☆97Updated 3 months ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆98Updated last month
- Implementation of Protein Invariant Point Packer (PIPPack)☆32Updated last year
- ☆40Updated last year