Alternatives and similar repositories for bagel

Users that are interested in bagel are comparing it to the libraries listed below

• bwicky / oligomer_hallucination
  ☆36Updated last year
• KULL-Centre / _2024_cagiada_stability
  ☆70Updated 4 months ago
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆55Updated 9 months ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆51Updated 2 months ago
• jonfunk21 / ProteusAI
  ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…
  ☆60Updated 5 months ago
• gitter-lab / metl
  Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models
  ☆38Updated last month
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆70Updated last month
• adaptyvbio / competition_metrics
  Metrics for our protein design competitions.
  ☆34Updated 9 months ago
• clami66 / AF_unmasked
  Source code and examples for AlphaFold Unmasked
  ☆73Updated 2 months ago
• AbSciBio / igdesign
  ☆43Updated 7 months ago
• patrickbryant1 / Cfold
  Structure prediction of alternative protein conformations
  ☆76Updated 5 months ago
• Kuhlman-Lab / alphafold3
  Kuhlman Lab Installation of AlphaFold3
  ☆29Updated 2 months ago
• the-protein-engineering-tournament / pet-pilot-2023
  Results and data from the pilot round of the Protein Engineering Tournament
  ☆30Updated 4 months ago
• silicogenesis / protkit
  A Unified Approach to Protein Engineering
  ☆42Updated last year
• rohitsinghlab / raygun
  Template-based protein design with Raygun
  ☆71Updated this week
• softnanolab / boileroom
  Protein prediction models implemented with Modal
  ☆20Updated this week
• flyark / AFM-LIS
  Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)
  ☆58Updated 4 months ago
• bene837 / af2seq
  ☆44Updated 10 months ago
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆39Updated 5 months ago
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆41Updated last week
• liuyf020419 / SCUBA-D
  ☆60Updated last year
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆38Updated 10 months ago
• Kuhlman-Lab / evopro
  ☆85Updated last week
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆55Updated last month
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆63Updated 8 months ago
• Profluent-AI / proseLM-public
  Adapting protein language models for structure-conditioned design
  ☆40Updated last year
• baker-laboratory / CA_RFDiffusion
  ☆62Updated 2 months ago
• amyxlu / plaid
  All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins
  ☆103Updated 2 months ago
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆68Updated 11 months ago
• RosettaCommons / AF2_peptide_hallucination
  Code for designing binders to flexible peptides with AlphaFold2 Hallucination
  ☆27Updated last year