MSA Transformer reproduction code
☆91Oct 21, 2021Updated 4 years ago
Alternatives and similar repositories for msa-transformer
Users that are interested in msa-transformer are comparing it to the libraries listed below
Sorting:
- Official repository for the ProteinGym benchmarks☆394Jan 12, 2026Updated last month
- Source code for RNA-FrameFlow: SE(3) Flow Matching for 3D RNA Backbone Design☆95Oct 15, 2025Updated 4 months ago
- Public Release of ProGen3 family of Models☆100Jul 21, 2025Updated 7 months ago
- ☆255Jul 31, 2024Updated last year
- A program fror inter-protein contact prediction from structures of interacting proteins☆20Jun 1, 2024Updated last year
- Cython implementation of PDB -> DataFrame parsing☆33Dec 23, 2025Updated 2 months ago
- Complete saturation mutagenesis of a protein using ESM☆16Feb 20, 2024Updated 2 years ago
- MSAGPT☆37Nov 20, 2024Updated last year
- Mono-repo for protein utilities.☆21Oct 26, 2021Updated 4 years ago
- Compressing protein structures effectively with torsion angles☆188Feb 10, 2026Updated 3 weeks ago
- ☆12Nov 22, 2024Updated last year
- Repository for publicly available deep learning models developed in Rosetta community☆123Sep 18, 2021Updated 4 years ago
- RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…☆98Jan 24, 2023Updated 3 years ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Feb 21, 2026Updated 2 weeks ago
- Making Protein folding accessible to all!☆25Jan 11, 2024Updated 2 years ago
- Geometric Vector Perceptrons --- a rotation-equivariant GNN for learning from biomolecular structure☆318Nov 15, 2025Updated 3 months ago
- ☆36Jan 14, 2025Updated last year
- Deep transformer for predicting interchain residue-residue distances of protein complexes☆13Mar 19, 2024Updated last year
- ☆12Dec 2, 2024Updated last year
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆569Nov 19, 2025Updated 3 months ago
- Implementation for SE(3) diffusion model with application to protein backbone generation☆415Jul 3, 2023Updated 2 years ago
- random colab notebooks for biology☆26Aug 23, 2025Updated 6 months ago
- Fast protein backbone generation with SE(3) flow matching.☆315Jul 19, 2024Updated last year
- Single-sequence and Profile-based Prediction of RNA Solvent Accessibility Using Dilated Convolution Neural Network☆13Jun 22, 2022Updated 3 years ago
- Adapting protein language models for structure-conditioned design☆40Aug 5, 2024Updated last year
- Iterative masking algorithm on MSA Transformer to generate synthetic sequences☆28Jan 17, 2024Updated 2 years ago
- ☆118Dec 7, 2022Updated 3 years ago
- A domain parser for Alphafold models☆46Dec 12, 2023Updated 2 years ago
- ☆130Updated this week
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆93Apr 24, 2024Updated last year
- Using Rotamer Interaction Fields from RIFGen/Dock in python☆16May 2, 2021Updated 4 years ago
- This is an official implementation for "MMSite: A Multi-modal Framework for the Identification of Active Sites in Proteins".☆18Jan 4, 2025Updated last year
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆174Feb 4, 2026Updated last month
- Features Based Conformational Clustering of MD trajectories. See details at:☆10Nov 20, 2025Updated 3 months ago
- Evolutionary couplings from protein and RNA sequence alignments☆299Oct 23, 2025Updated 4 months ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆229Aug 7, 2025Updated 7 months ago
- CLEAN: a contrastive learning model for high-quality functional prediction of proteins☆307Apr 6, 2025Updated 11 months ago
- Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…☆17Jan 17, 2025Updated last year
- ☆17Oct 27, 2024Updated last year